Gene DET0169 details

Gene Information

• Locus tag: DET0169
• ID: 3230577
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: -
• Start bp: 163656
• End bp: 164207
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637119736
• Product: RNA polymerase sigma factor SigW, putative
• Protein accession: YP_180917
• Protein GI: 57235105
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.646102
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGTGT CCGGATTGAA TGAAAAAAAC CTAGTAGAAA AAGCAAAAAC AGACTCTTCG 
GCGTTTGGAG AGCTCTATGA GTTGCATTAC GCCAGAATCT TCGGTTACGT GCTCAGGAGG 
ACTGCCAATC TCTATCAAGC ACAGGACGTA ACATCTGAAG TATTTTTTAA GGCGTTGAAA 
GGCCTCAAGT CATTCAATTG GAATGGCACA CCTTTTTCAG CTTGGTTATA TCGAATAGCT 
TCCCATGAGA TAGTAAATAA TTGCCGTCAC AATTCTCGCT ATTCATATGA AATAAGTCTC 
AATGGATTGG AGTCGATAGC ACCTGTAGAA AACGTACTCC AACACGAGCG AGATGTGGAG 
GAGAGCCTGG ACCTTCAGAG CAGTTTTCTT AAACTTCCAG CTAAATATCA AGAAATCATA 
GCCCTTCGAT ATTTTGAAGA TATGGAAATC AGCCAAATAG CGGCAATAAC TGGTAAATCG 
GAAAACACTG TGAAATCGTT GATATTTCGG GGGATAAGTT GCCTTAAGGA ACTCAACGAG 
AAGTCGATGT AG 

 

Protein sequence

MDVSGLNEKN LVEKAKTDSS AFGELYELHY ARIFGYVLRR TANLYQAQDV TSEVFFKALK 
GLKSFNWNGT PFSAWLYRIA SHEIVNNCRH NSRYSYEISL NGLESIAPVE NVLQHERDVE 
ESLDLQSSFL KLPAKYQEII ALRYFEDMEI SQIAAITGKS ENTVKSLIFR GISCLKELNE 
KSM