| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0132 |
|---|
| Symbol | |
|---|
| ID | 3230502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 131241 |
|---|
| End bp | 131813 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637119700 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_180882 |
|---|
| Protein GI | 57235032 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATATT CCAACTACCG CAACCAGCCG GATATCATAC TCCTGATAAT AATAACCTGT
GTGGTGGTAT TCTTCGGGGT TAATTTTGCT CCCCAAATCG GGCCGTACCT GGCACTTCAG
CCGGCAACCG CCCTAAGCCA CCCCTGGACT ATTTTAACCA GCCTGTTTGT CCATGCAAAC
CTGTGGCATC TTTTCGCCAA CATGCTTACC CTGTATTTCT TCGGCAATGC CCTGCTCCAG
ATGGTAAGTC AGCGCAGCTG GCTAATCATA TTTTTCGGGG GCGGTCTGGC GGGCAGTTTG
CTGTTCATAC TCCTCAACGC CGGCTCTTAC GGGTATGTCA TAGGTGCTTC CGGGGCGGTT
TTTGCACTTG GCGGCGCTCT GGCCGTACTC CGCCCGAACT CCAAGGTTAT GGTTTTCCCC
CTGCCCATAC CTATCCCCCT CTGGATTGCA GTTTTGGGCA GTTTTGCTAT CCTGTCCTTC
CTGCCTTCAG TTGCCTGGCA GGGTCATTTG GGAGGGTTAC TGGTGGGGCT TGCCTGCGGT
TACCTTATCC AGCGCGGCAA GTTTAGATTC TAA
|
|---|
| Protein sequence | MRYSNYRNQP DIILLIIITC VVVFFGVNFA PQIGPYLALQ PATALSHPWT ILTSLFVHAN
LWHLFANMLT LYFFGNALLQ MVSQRSWLII FFGGGLAGSL LFILLNAGSY GYVIGASGAV
FALGGALAVL RPNSKVMVFP LPIPIPLWIA VLGSFAILSF LPSVAWQGHL GGLLVGLACG
YLIQRGKFRF
|
|---|
| |