| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0123 |
|---|
| Symbol | |
|---|
| ID | 3230519 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 120504 |
|---|
| End bp | 122435 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 643 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637119691 |
|---|
| Product | pyridine nucleotide-disulphide oxidoreductase family protein |
|---|
| Protein accession | YP_180873 |
|---|
| Protein GI | 57235049 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG1143] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0636906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGGTA GAATAGAGCA GTTTGGCTCA CAGGTGAGCT TGCAGATTGA CAATGTACTA
TATGTTGCAA GTATAATATC AGGAACTAGG TCTTTTAAAT ATCGGCTTAA ATATTTTGTA
GAAGAGACAT ATATGGCCAA AACAAAAGCA CCTGCAGACA AAATGGAACC GGCTGAAGAA
ATCAAACAGG ACGGCAAGGT AGTTTCTACC AAGCGCACCG CCGGCAGTGA GTTTTTCTGG
ACACAGAGCC GCTGCACCGG ATGTAACCGC TGTGCCAGCA TCTGCCCGGT AGATGCTATC
AAACTGGACA GGGATAAGAC ACCCACCAAA CGGGTCGGCA CCGCTCCCTG CACCCGCGCC
TGCCCCGCCG GATTGGATAT CCCCCGCTAT GTCCGCTTTG TAGCTGAGGG CAACGCCCCG
GCTGCCACTG CTGTTATGAG AGAAAAGATA CCCTTCCCTT CAGTGTGCGG TTATGTCTGT
TTCCACCCCT GTGAACTGGA GTGCCAGCGC CAGAAATTTG ACGAGCCTAT TGCCATTCGG
GCTTTAAAGA GATATGCCGC TGAAAATGAC GACGGCAGTT GGAAAAATAA CCTTAAAATT
GCCCCTTCCA CCGGCAAAAA GGTAGCTATT ATCGGTTCCG GCCCAGCCGG GCTTACCTCA
GCCTACTTTT TGACCCTGCT GGGGCACGAA GCAACTATAT TTGAATCTAT GGAATACGCC
GGCGGCAAGA TGTTTTACAG TATACCCGAG CATCAGCTGC CCAAAGATAT ACTCAATAAA
GAAATTAAGG CCATCACCGA CCTGGGCGTA ACCATCCATA CCTCCTGCCA GGTGCAGTCC
GTACAGACCC TGTTAAAACA GGGCTACGAT TCGGTTCTGC TTTCCACCGG CGTACTCGGT
CTGGACGAAG GGCTGCTCCT TCCCTGTGAT GAAACCGTTG AATCAGACCT GATGCAGGGC
AGTGATTTCC TTAAGAATAT AAAATCCTCC ACCAAAGAAA GCCTGGGTGA CAAAGTAGTA
ATAATAGGCG GCGGCAGCGA AGCTTACAAC AGTGCCTTTG CCGCTAAGAG CCTGGGGGTC
TCAGAGGTGC ATCTGGTTTG CAGCCGCCAC GCCGGCAGCA AGGAAGCCTC CCCGGAGGAA
GTAGACCGGG CTATAGATGC AGGTGTGACT GTTCATCCCT CACTGGATTT TGCAAAGCTG
GTCAGGCTGG ACGGCAAAAT TGAGGGAGTA GAACTTTTCC GTATCCGCTC TTACGGATAT
GACAAAGAAA ATAAACTCCA TTATGAGATA ATAAATGATA CCCGCCGCTT TATAGCGGCA
GATACAGTTA TCACTACGGT TACTCCCAAT GAAAAACCGG GGGCGGATTA TCTTTCCGTA
GTCCAGCCCG GCGTATTTGC CGCCGGTGAC GGCATCAGCG GTGCCCGCTC GGTCATTGAG
GCTATGGCCG CCGGACGTTC GGTAGCCGGT CTGATTGACA AATATCTGGG GGGCGAAGGC
AATCTGGATG AGACTCTGGC CCCGCCTGAA AAAAATATCA AACCCCTTAA CGAACCTAAG
GGTCAAAACC GCTCTCAGGT AGAGCTTAGT CTGGTAAAAC AGGCCGGTGG CGACAAAGTG
GAGATTGAAA AAACTCTGTC TCCCGAAGCT GCCAAGAAGG AAGCCCAGAG ATGTCTGCGG
TGTGATATTG TTCATCAGGT ACATGACTAT AGTCTGGATA CCTCCAGCTG CACCTACTGC
GGACGGTGCG TAGACGCCTG CTACTGGGAT GCCATTACCA GCGGTTATGG TTATGAAGCC
GCCGCCAAGA AACGCAAGGC AGAGATAACC GCTCTGGAGG AAAAGAACGG CGTTTACAAC
TACGCTATCC GGATTCTGCC TGTTGCCATA GGCCTTATGA TAATAGCTGC CGCTGTGGCT
AAACTTTTCT AA
|
|---|
| Protein sequence | MGGRIEQFGS QVSLQIDNVL YVASIISGTR SFKYRLKYFV EETYMAKTKA PADKMEPAEE
IKQDGKVVST KRTAGSEFFW TQSRCTGCNR CASICPVDAI KLDRDKTPTK RVGTAPCTRA
CPAGLDIPRY VRFVAEGNAP AATAVMREKI PFPSVCGYVC FHPCELECQR QKFDEPIAIR
ALKRYAAEND DGSWKNNLKI APSTGKKVAI IGSGPAGLTS AYFLTLLGHE ATIFESMEYA
GGKMFYSIPE HQLPKDILNK EIKAITDLGV TIHTSCQVQS VQTLLKQGYD SVLLSTGVLG
LDEGLLLPCD ETVESDLMQG SDFLKNIKSS TKESLGDKVV IIGGGSEAYN SAFAAKSLGV
SEVHLVCSRH AGSKEASPEE VDRAIDAGVT VHPSLDFAKL VRLDGKIEGV ELFRIRSYGY
DKENKLHYEI INDTRRFIAA DTVITTVTPN EKPGADYLSV VQPGVFAAGD GISGARSVIE
AMAAGRSVAG LIDKYLGGEG NLDETLAPPE KNIKPLNEPK GQNRSQVELS LVKQAGGDKV
EIEKTLSPEA AKKEAQRCLR CDIVHQVHDY SLDTSSCTYC GRCVDACYWD AITSGYGYEA
AAKKRKAEIT ALEEKNGVYN YAIRILPVAI GLMIIAAAVA KLF
|
|---|
| |