| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0111 |
|---|
| Symbol | |
|---|
| ID | 3230546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 109522 |
|---|
| End bp | 110586 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637119680 |
|---|
| Product | [Ni/Fe] hydrogenase, group 1, small subunit, putative |
|---|
| Protein accession | YP_180862 |
|---|
| Protein GI | 57235075 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.2309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATA CTAAACTTAC TAGACGGGAT TTTGTACAGC TAGCCGCCGG CTCTACCGCC
GCCCTCAGTC TGGGTGCTTT GAAGCTCCCC GAATTTGAAA AAATGTTTGC CGAGGCTTTG
AAAGAAATCC CGGTAATATG GCTCCAGGGT GCGGGCTGCA ACGGATGCAC TATCTCTACT
ATCAACGTTG TTTCACCCAC CATCCAGGAT TTGCTGCTTA CTTCGGTAGT CCCCGGTACT
CATGTATCCA TGCAGTACCA CCCCACTATC ATGGCCGCTC AGGGTGATTT GGCTATGAGC
ACTATCACCG ATACCGTGGC CAAAGGGCCG TTTGTACTGG TACTTGAAGG CTCTGTACCC
CTCAAAGATA ACGGGATTTA TGCTGAGGTA GGCGAAGAGA ACGGCGAAGG TATCACCATA
CTGGAGCATG TACTGAATCT GGCTCCCAAG GCACTGGCCA TTGTGGCTGC CGGTACTTGT
GCCGCCTTCG GAGGCATCAC CGCTGCCGCC CCCAACCCCA CCGGTGCCAA GGCTCTTGAA
GAAATTCTTA AAGACCATAA TATAACTACC CCGGTTGTAA ACCTGCCCGG CTGCCCTCCT
CATCCGGATT GGGTAGTGGG CACTCTGGCT ACCATACTTA TGAGCGGACT TGACGCACTT
GACCTTGATA AGATGGGCCG CCCCAAGGCT TATTACGGCA AACTCCTTCA TGACCAGTGC
CCGCGCCGCG GTCACTACGA AAAGGGTTTG TTTGCCACCA AACTGTCCGA GCCTTACTGT
CTGTTCCTGG TAGGCTGCAA AGGTCCGGTG ACCTATGCTG ACTGTTCTGA CAGGCTCTGG
AACAATAAAA CCCGCTGGTG CGTAGAAGCT GATTCTCCGT GTATCGGCTG TGCCCACCCC
GGCTTCCCGG ATGCGGTTTC TCCCATGTTT GAAGCACCGC CTGTTATCAA TAGTACTGAC
AAACTGGCTA TCGGTATTGC CGGTACTGCC GTGGTACTGA CTGCCGGTGT AGCAGCCGTA
GAACTTGCTA AAAAAGCCAA GCGGAATGCC GCAAAAAAGG GTTAG
|
|---|
| Protein sequence | MFNTKLTRRD FVQLAAGSTA ALSLGALKLP EFEKMFAEAL KEIPVIWLQG AGCNGCTIST
INVVSPTIQD LLLTSVVPGT HVSMQYHPTI MAAQGDLAMS TITDTVAKGP FVLVLEGSVP
LKDNGIYAEV GEENGEGITI LEHVLNLAPK ALAIVAAGTC AAFGGITAAA PNPTGAKALE
EILKDHNITT PVVNLPGCPP HPDWVVGTLA TILMSGLDAL DLDKMGRPKA YYGKLLHDQC
PRRGHYEKGL FATKLSEPYC LFLVGCKGPV TYADCSDRLW NNKTRWCVEA DSPCIGCAHP
GFPDAVSPMF EAPPVINSTD KLAIGIAGTA VVLTAGVAAV ELAKKAKRNA AKKG
|
|---|
| |