Gene DET0060 details

Gene Information

• Locus tag: DET0060
• Symbol: ispF
• ID: 3229030
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: +
• Start bp: 55826
• End bp: 56299
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637119630
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_180813
• Protein GI: 57233568
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTATTG GAAACGGTTA TGATGTACAT CGTCTGGCAC CGGGGCAGAA GCTGGTGCTG 
GGCGGGGTGG AAATACCCTT TGAGTGCGGG CTTATCGGCT GGAGTGATGC GGACGTGCTT 
ACCCACGCCA TTATGGATTC GCTTCTGGGG GCGGCGGCAC TGGGGGATAT AGGGCTTTAC 
TTCCCGCCGG GTGACCCTAA GTTCAAGGGC ATATCTTCAC TTAAACTCCT TGAGCAGGTA 
ACAGCCTTGC TGGCTGAAAA AGGTTTCGGG ATAATAAACG TAGATTCAGT TATAGTAGCG 
GAGGAACCAA AGCTACGCGG CCATGTAGAT ACCATGCGTA AACACCTTGC CAAGGCCATG 
GGCATAGACC CGGGGCGGGT AGGGATAAAA GCCAGCACCT CGGAGCAACT CGGCTTTGTA 
GGCCGCGAGG AGGGCATGGC AGCCTGGGCA GTGGCCCTCG TAGACGAAAA ATAG 

 

Protein sequence

MRIGNGYDVH RLAPGQKLVL GGVEIPFECG LIGWSDADVL THAIMDSLLG AAALGDIGLY 
FPPGDPKFKG ISSLKLLEQV TALLAEKGFG IINVDSVIVA EEPKLRGHVD TMRKHLAKAM 
GIDPGRVGIK ASTSEQLGFV GREEGMAAWA VALVDEK