| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0047 |
|---|
| Symbol | |
|---|
| ID | 3229057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | + |
|---|
| Start bp | 38985 |
|---|
| End bp | 40184 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637119617 |
|---|
| Product | DNA polymerase III delta subunit-related protein |
|---|
| Protein accession | YP_180802 |
|---|
| Protein GI | 57233595 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00913059 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCGG AGTTCGTAGG GCATTACAAC TTCTTCGGGC ATTGTTTCAA ATCCTCCAAG
TGCAGCTTAC GGGCAGATTG TAACATACTG CCAGGCATTT TTGCACTAAA CTTCAAAGGT
TACGCGCCCG TTTCGTTATG CTACAATATC AGCCGAAGGT GGCTGTTAAA TTTGCTGTAT
ATTTTTACCG GCAGTGATGA TTTTTCCCTG AAAGAACGCC TGAAGCAGAT AAAACTGGCT
TTGGGTGATG AGTCTTTGTC CTCTGCCAAT ACCACCATGC TGGAGGGCAA AAACCTGACG
GCTGCCGAAC TTCAAAACTA TGTCCAGACT ATTCCCTTTT TAGCCCCTGC CCGGCTGGTT
ATGGTAAACG GCCTGCTGGA GAGGTTTGAA GGCTCAAAAG GTAAAGCCGC CGCCAAAGAT
AAGGCAGACA AAAACAGCCC GGATGAATTT GCCCGGGCGC TGTCTAATCT GCCTCCCACA
ACCCTGGCGG TGCTTCTGGA CTATACCACC GCTAAAGACG GTGATTACCG TGAAAAAGAA
AAAGTATCCG CTTTGGCCTC AAACCCCCTT TTTAAGCTGG TAAGCCCCGG TGCTGAGGTA
AAGCACTTTG CACCCCTTTC TGCCCAGAAC CTGCCCGGCT GGGTAATGCA GCGTGCCAAA
CAGTCTTCTA TCCAGATGTC TGTTCCGGCA GCCCGTCTGC TGGCCCGTTT TGTGGGGGCG
GACTTGTGGG CGCTTTCCTC CGAGATTGAG AAACTGGGCT TGTATGCCCA GGGGCGGGCG
GTGGAGGAAG CCGATGTTGA AAATATGGTG GGTTATTCCC AGGAAGTAAA TATATTCGGT
TTGGTGGATG CCGTACTGGA CCGCAAGGTT AAAGACGCCC AGCAGTCTCT GGCGGCTTTT
ACTGCCGGCG GCGGGTCACC CGGTTTTTTG CTGTTTATGC TGGTACGCCA GCTGCGGCTG
ATGGTGCGTT ATACCGCCCT TAAAAAGCGG GGGCTGAAAG AGGCCGAGAT TTTTAAAGCT
ATGGGCGGCT CTGAGTACGC CCTTAGGAAA ACAGCCTCTC AGGCGGCCTG CCAGAACATG
GACAGCCTTA AAGCTATTTA TTCCAAACTG CTGGAAACAG ATTTTAATAT AAAAACCGGC
CGCTTTGAAC CGGAGCTGGC CATGGGTTTG CTGGTTGCCG AACTTTGCGG GAGAAAATAG
|
|---|
| Protein sequence | MFAEFVGHYN FFGHCFKSSK CSLRADCNIL PGIFALNFKG YAPVSLCYNI SRRWLLNLLY
IFTGSDDFSL KERLKQIKLA LGDESLSSAN TTMLEGKNLT AAELQNYVQT IPFLAPARLV
MVNGLLERFE GSKGKAAAKD KADKNSPDEF ARALSNLPPT TLAVLLDYTT AKDGDYREKE
KVSALASNPL FKLVSPGAEV KHFAPLSAQN LPGWVMQRAK QSSIQMSVPA ARLLARFVGA
DLWALSSEIE KLGLYAQGRA VEEADVENMV GYSQEVNIFG LVDAVLDRKV KDAQQSLAAF
TAGGGSPGFL LFMLVRQLRL MVRYTALKKR GLKEAEIFKA MGGSEYALRK TASQAACQNM
DSLKAIYSKL LETDFNIKTG RFEPELAMGL LVAELCGRK
|
|---|
| |