| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TC0905 |
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| Symbol | rpoD |
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| ID | 1246274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlamydia muridarum Nigg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002620 |
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| Strand | - |
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| Start bp | 1047111 |
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| End bp | 1048826 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637061719 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | NP_297278 |
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| Protein GI | 15835519 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATGG ATACGCTAGA TAGTCAAGCT GCTGATGCAG CCCAAGAAGA AGAAATCCAA
AGAAAGTTAG AAGAGCTAGT CACTCTTGCT AAGGATCAAG GGTTCATCAC GTATGAAGAA
ATTAATGAAA TTCTTCCCCC TTCTTTCGAT TCGCCAGAAC AGATAGATCA AGTTTTAATT
TTTCTGGCGG GGATGGACGT TCAAGTCTTA AACCAAGCAG ACGTAGAGCG GCAGAAAGAA
AGAAAAAAAG AAGCTAAAGA GCTAGAAGGG TTGGCTAAGC GTTCTGAGGG AACGCCTGAT
GATCCAGTGC GTATGTATCT GAAGGAAATG GGTACAGTTC CTCTTCTTAC AAGAGAAGAG
GAGGTGGAGA TTTCTAAAAG GATAGAAAAA GCTCAGGTAC AAATAGAAAG AATTATTTTA
CGCTTTCGTT ATTCGACTAA AGAAGCGGTT TCTATTGCGC AATACTTAAT TAATGGTAAG
GAACGATTTG ATAAGATCGT TTCCGAAAAA GAGGTGGAAG ATAAGACACA TTTTCTTAAT
CTTTTGCCGA AGTTAATCTC TTTGCTGAAA GAAGAGGACT CTTACTTAGA AGAGCGGCTT
TTGGCTTTGA AAGATCCGGC ACTGTCCAAG CAAGATCAAG CAAAGTTGAA CGATGAGCTT
GAAAAATGCC GTATTCGAAC ACAAGCTTAT CTGAGATGTT TTCATTGTCG TCACAATGTC
ACGGAAGATT TTGGAGAAGT TGTTTTTAAA GCTTATGACT CGTTCTTACA GTTGGAACAA
CAAATCAATG ATTTAAAGGT TCGTGCTGAA AGAAATAAGT TTGCTGCAGC AAAACTAGCT
GCAGCCCGAC GCAAGCTTTA CAAACGAGAA GTTGCAGCGG GACGTACTCT TGAAGAGTTT
AAAAAAGATG TGCGGATGTT GCAGCGTTGG ATGGATAAAA GCCAGGAAGC AAAGAAAGAG
ATGGTGGAAT CCAACTTACG TTTGGTGATC TCTATCGCGA AAAAATATAC CAACCGAGGG
CTGTCTTTCT TGGATTTGAT TCAAGAAGGA AATATGGGCT TAATGAAAGC TGTTGAAAAA
TTTGAGTATC GCCGGGGTTA TAAATTTTCA ACTTATGCCA CTTGGTGGAT TCGTCAGGCT
GTGACGCGAG CTATTGCCGA TCAGGCAAGA ACCATTCGAA TTCCTGTTCA TATGATCGAG
ACCATTAATA AGGTGCTTCG TGGAGCCAAG AAATTAATGA TGGAAACAGG AAAAGAGCCT
ACGCCCGAAG AACTCGGAGA GGAACTAGGT TTCACTCCAG ACCGTGTTCG AGAAATTTAT
AAGATCGCTC AGCATCCGAT TTCTTTACAG GCTGAGGTTG GAGATAGTGG AGAAAGCTCT
TTTGGAGATT TCTTGGAAGA TACAGCTGTT GAATCTCCGG CAGAGGCAAC AGGCTACTCC
ATGTTGAAAG ACAAAATGAA GGAAGTGCTA AAAACGCTTA CTGATCGCGA ACGTTTTGTT
TTGATCCATC GGTTTGGCCT TTTAGATGGC CGTCCCAAAA CTTTGGAAGA GGTAGGCTCC
GCGTTCAACG TGACACGAGA GCGGATTCGA CAAATCGAAG CCAAAGCTTT GCGAAAAATG
CGTCATCCTA TCCGTTCCAA ACAGCTACGA GCATTCTTGG ATTTATTGGA AGAAGAGAAG
ACTGGTTCGG GCAAGATTAA GAGTTATAAG AATTAA
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| Protein sequence | MRMDTLDSQA ADAAQEEEIQ RKLEELVTLA KDQGFITYEE INEILPPSFD SPEQIDQVLI
FLAGMDVQVL NQADVERQKE RKKEAKELEG LAKRSEGTPD DPVRMYLKEM GTVPLLTREE
EVEISKRIEK AQVQIERIIL RFRYSTKEAV SIAQYLINGK ERFDKIVSEK EVEDKTHFLN
LLPKLISLLK EEDSYLEERL LALKDPALSK QDQAKLNDEL EKCRIRTQAY LRCFHCRHNV
TEDFGEVVFK AYDSFLQLEQ QINDLKVRAE RNKFAAAKLA AARRKLYKRE VAAGRTLEEF
KKDVRMLQRW MDKSQEAKKE MVESNLRLVI SIAKKYTNRG LSFLDLIQEG NMGLMKAVEK
FEYRRGYKFS TYATWWIRQA VTRAIADQAR TIRIPVHMIE TINKVLRGAK KLMMETGKEP
TPEELGEELG FTPDRVREIY KIAQHPISLQ AEVGDSGESS FGDFLEDTAV ESPAEATGYS
MLKDKMKEVL KTLTDRERFV LIHRFGLLDG RPKTLEEVGS AFNVTRERIR QIEAKALRKM
RHPIRSKQLR AFLDLLEEEK TGSGKIKSYK N
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