Gene TC0877 details

Gene Information

• Locus tag: TC0877
• ID: 1246245
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlamydia muridarum Nigg
• Kingdom: Bacteria
• Replicon accession: NC_002620
• Strand: +
• Start bp: 1016309
• End bp: 1018261
• Gene Length: 1953 bp
• Protein Length: 650 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637061690
• Product: regulatory protein, putative
• Protein accession: NP_297250
• Protein GI: 15835491
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2208] Serine phosphatase RsbU, regulator of sigma subunit

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.410467
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCATCC CTATTCACGA GAACCGATAT GCTATGGTCT CTTTCACACG AACGATAGGT 
TTTCGTTTAT GGCTTATCTG TGTAGCCGCT ATCATGTTCC CTTTAGGGAT TAATATTTTT 
CAACTGAACC TCCAGCAATA TAAAAAAACA TTAGTTTCTA CCACTTCTGA CTTGCGAGAA 
AACGCTTTAT TTAAAGCACA CACATTACAG CAGGTTATCC CTTTAAACGT TGATATACTG 
GCTCTTTTTT CTGAAATTTT CGATTTAGAT AGAGGGGTTC CCTCTGAACC CGATCTCGTT 
CTCAGCAAGG AGATGGAAAA AATTTTTCAC TCCACTTACA AAGAGATCTC TCTTGTTAAA 
AAGGATGCCG ACGGCAATTT TACAGTTGTC GCTTCTAGCC AAATTCAACA ACTTGGAAAG 
AACTATAATC AAGAAATCTT TCTTTCTTCT TATCAACCTT TTTTAGCTAC TTTGAGGCAC 
TCTGATGGAA CTTCTCCAGT TCTTTCTGTA TTGCAAACCA ATATTTTCGA TATTAGCTCT 
CAAGAGGTTC TTGGTATCCT CTATACTCTT TCCGATACGG ATTACTTATT AGATGGGTTG 
CTAGCTTCAA AAAACCCTCG TGCTATCAAA ACGGCTATCC TTTCTAAAAA TGGGATTATT 
CTCCAAGCAA CTGACTCAAC GCTGAATCTT ATATCTATAT ACAAAGAAGT CTCTCAAGAG 
CAATTCTGCG ATGTGTTCCT TCGTAAAGAT TTCTGCCCCC CACATCTCCT ACTACGATCT 
CCCTTAAACC TTTCTCCTCT TCCTTACGGA GAAGGCTTTG TTTCTTTCTA CATCGGAGAC 
AAAGAAATGT GGGGCTATAT CCATCCCCTA CAGGACATGG ATTTCTGTAT TCTAACTTAT 
GAAGAAAAAA CCACGATTTT TGCTTCTTTA TGGCGTCGAG CCTTATTATA TTTTGCTTAT 
TTTTGCTGCG TACTTTTAGG AAGTATTACC GCTTTTTTAG TAGCAAAACG CTTATCTAAG 
CCTATACGTA AGCTTGCTAC AGTGATGATC GAAACACGAC GTAATCAACA CCATCCTTAC 
GAACCAGACT CCTTAGGATT TGAAATTAAT CGTCTGGGAG AAATCTTTAA CTCGATGGTG 
CAAAGCCTCT CGCAACAACA ATCACTGGCA GAAAAAAACT ATGAAATCAA ACAGCAAGCC 
CAAAATGCTC TAAGATTAGG AGAAGAAGCA CAACAACGCC TTCTCCCTAA TCAGCTCCCT 
CATTATCCTA CAGCAGAAAT TGCAAAAGCC TATATCCCTG CCATTACGGT AGGAGGAGAC 
TTTTTTGATT CCTTTGTCAT AGGCGAAGGG GATCAGGCAA AACTGTTCTT AATAGTTGCT 
GATGCTTCAG GGAAAGGAGT GAATGCCTGC GCTTACTCTC TTTTCCTTAA AAATATGTTA 
CACACCTTTT TAAGCGAACT TTCATCTATA CAAGAAGCCG TTCAACAAAC TTCTTCGCTC 
TTCTACAAGC AAACAGCAGA GTCAGGAATG TTTGTTACCT TATGCATTTA CTGTTATCAC 
TATGCAACAC GGCAGCTAGA ATACTATTCC TGTGGACATA ATCCTGCCTG CCTACGCATG 
CCTAATGGAG AAGTTTCTTT TCTCTCTCAC CCTGGTATGG CCCTAGGATT CTTACCGGAA 
GTACCGCCTC ATCCTGCATA TACTCTCACG CTTGAAGAAG AGTCTCTTCT GGTTCTCTAT 
ACAGATGGTG TAACCGAAGC GAATAATAAA CATGGCGAAA TGTTCGGAGA AGAACGCTTA 
AAAACCTTAA TCGCCTCTCT AACCAAACAT AGTGCGGAAG AGGCAATCCA ATCCATTATG 
CTTTCTATTA AATCTTTTGT GAAAGACTAC CAACAACATG ATGATATCAC GCTACTAGTC 
TTGAAAATCA CTAAGACTGA TACTGCTCAT TGA 

 

Protein sequence

MTIPIHENRY AMVSFTRTIG FRLWLICVAA IMFPLGINIF QLNLQQYKKT LVSTTSDLRE 
NALFKAHTLQ QVIPLNVDIL ALFSEIFDLD RGVPSEPDLV LSKEMEKIFH STYKEISLVK 
KDADGNFTVV ASSQIQQLGK NYNQEIFLSS YQPFLATLRH SDGTSPVLSV LQTNIFDISS 
QEVLGILYTL SDTDYLLDGL LASKNPRAIK TAILSKNGII LQATDSTLNL ISIYKEVSQE 
QFCDVFLRKD FCPPHLLLRS PLNLSPLPYG EGFVSFYIGD KEMWGYIHPL QDMDFCILTY 
EEKTTIFASL WRRALLYFAY FCCVLLGSIT AFLVAKRLSK PIRKLATVMI ETRRNQHHPY 
EPDSLGFEIN RLGEIFNSMV QSLSQQQSLA EKNYEIKQQA QNALRLGEEA QQRLLPNQLP 
HYPTAEIAKA YIPAITVGGD FFDSFVIGEG DQAKLFLIVA DASGKGVNAC AYSLFLKNML 
HTFLSELSSI QEAVQQTSSL FYKQTAESGM FVTLCIYCYH YATRQLEYYS CGHNPACLRM 
PNGEVSFLSH PGMALGFLPE VPPHPAYTLT LEEESLLVLY TDGVTEANNK HGEMFGEERL 
KTLIASLTKH SAEEAIQSIM LSIKSFVKDY QQHDDITLLV LKITKTDTAH