| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TC0848 |
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| Symbol | sctJ |
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| ID | 1246216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlamydia muridarum Nigg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002620 |
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| Strand | + |
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| Start bp | 984580 |
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| End bp | 985566 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637061661 |
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| Product | type III secretion protein SctJ |
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| Protein accession | NP_297221 |
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| Protein GI | 15835462 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
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| TIGRFAM ID | [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTCGTT ATACTCTTTC TCGATCCTTA TTTTTTATTT TTGCTCTTTT TTGTTGTTCG
GCATGTGACA GTCGCTCCAT GATTGCTCAT GGACTCACTG GACGTGAGGC CAACGAGATT
GTGGTTCTCC TAGTAAGTAA AGGAGTATCC GCACAAAAAG TTCCTCAAGT AGCTGGTTCG
TCAGGAGGGG GATCTTCAGA GCAACTTTGG GATATCTCGG TTCCTGCAGC ACAAATCACA
GAAGCTCTTG CTATCCTAAA TCAGGCAGGG CTCCCTCGAA TGAAAGGAAC TAGCCTCCTC
GATCTTTTTG CGAAACAAGG GCTTGTGCCT TCTGAAATGC AAGAAAAAAT CCGTTACCAA
GAAGGTCTTT CTGAACAAAT GGCTACAACC ATTAGAAAGA TGGATGGTAT CGTTGATGCT
AGTGTACAGA TTTCCTTCTC TCCAGAAGAA GATCAACTTC CACTAACAGC CTCTGTTTAT
ATTAAACACA GAGGTGTTTT AGATAATCCT AACAGCATTA TGGTTTCAAA AATCAAACGC
TTGGTAGCGA GTGCTGTTCC TGGCCTTTGT CCTGAAAATG TTTCTGTAGT AAGCGACCGC
GCTTCTTACA GTGACATTAC TATTAACGGA CCTTGGGGCC TCTCCGATGA GATCGATTAT
GTCTCCGTTT GGGGCATTAT CCTTGCTAAG AATTCTCTCA CTAAATTCCG ACTTGTTTTC
TATTTCCTGA TTCTTCTGCT CTTTGTTCTT TCTTGCGGCC TTCTTTGGGT TATTTGGAAA
ACTCACTCAT TAATTGGTGC TTTGGGAGGA ACAAAAGGGT TCTTTGATCC TGCTCCATAC
TCACAGCTTG CTTTCACACA AAATAAGGCA GCTGCTGCTA AGGAGACTTC AGAAGCAACA
GAAAGCACAG GAGGGGCTCA GCCAGCATCA GAAGAATCCC CTAAAGAGAA TGTAGAAAAA
CAAGAAGAGA ATAACGAGGA CGCTTAA
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| Protein sequence | MFRYTLSRSL FFIFALFCCS ACDSRSMIAH GLTGREANEI VVLLVSKGVS AQKVPQVAGS
SGGGSSEQLW DISVPAAQIT EALAILNQAG LPRMKGTSLL DLFAKQGLVP SEMQEKIRYQ
EGLSEQMATT IRKMDGIVDA SVQISFSPEE DQLPLTASVY IKHRGVLDNP NSIMVSKIKR
LVASAVPGLC PENVSVVSDR ASYSDITING PWGLSDEIDY VSVWGIILAK NSLTKFRLVF
YFLILLLFVL SCGLLWVIWK THSLIGALGG TKGFFDPAPY SQLAFTQNKA AAAKETSEAT
ESTGGAQPAS EESPKENVEK QEENNEDA
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