| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TC0588 |
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| Symbol | rpoC |
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| ID | 1245947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlamydia muridarum Nigg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002620 |
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| Strand | - |
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| Start bp | 700860 |
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| End bp | 705050 |
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| Gene Length | 4191 bp |
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| Protein Length | 1396 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637061393 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | NP_296964 |
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| Protein GI | 15835205 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAAAG AAGGTTCTCG AGACGATGCA GCCCTAGCAA AAGAAGGGTT GTTTGATAAG
TTAGAAATTG GGATTGCTTC AGATGTGACT ATTCGCGACA AGTGGTCTTG TGGCGAAATT
AAGAAACCTG AGACGATCAA TTATCGCACA TTCAAGCCTG AAAAAGGCGG ATTGTTTTGT
GAGAAGATTT TCGGTCCTAC TAAGGACTGG GAATGTTACT GCGGTAAATA CAAGAAGATT
AAGCACAAAG GTATTGTGTG TGATCGTTGC GGAGTGGAAG TCACGCTGTC TAAGGTGCGA
CGAGAAAGAA TGGCTCATAT TGAATTAGCT GTTCCTATTG TTCACATTTG GTTTTTCAAA
ACTACTCCAT CTAGAATTGG TAATGTTTTG GGAATGACAG CTTCGGATTT GGAGCGTGTA
ATTTACTACG AAGAATACGT TGTCATTGAT CCAGGTAATA CTGATCTTGT GAAAAAACAA
CTTCTGAATG ATGCAAAATA TCGAGAAGTT GTTGAGAAAT GGGGTAAAGA TGCTTTTGTC
GCCAAAATGG GGGGAGAAGC TGTTTATGAT CTTCTTAAAT CCGAGGATTT AGAAAGCCTC
CTTGGTGAGC TTAAAGATCG TTTGAGAAAA ACAAAATCCC AGCAAGCAAG AATGAAGCTT
GCTAAGCGGT TGAAGATTGT AGAAGGGTTT GTATCTTCCT CTAACCGTCC AGAATGGATG
GTCTTGAAGA ACATCCCTGT TGTTCCACCA GATCTTCGTC CTTTAGTTCC ATTGGATGGA
GGGCGTTTTG CTACTTCAGA TCTGAACGAT TTATATCGTA GGGTTATTAA TCGAAATAAT
CGTTTGAAAG CTATCTTGCG CTTGAAGACT CCTGAGGTAA TTGTTCGCAA TGAGAAACGG
ATGTTACAGG AAGCTGTGGA TGCTCTGTTT GATAATGGAC GTCATGGACA TCCTGTTATG
GGAGCAGGAA ATAGACCCCT TAAGTCTCTA TCAGAGATGT TAAAAGGGAA AAATGGTCGT
TTCCGACAAA ACTTATTAGG TAAACGAGTA GACTACTCTG GCCGTTCTGT TATTATTGTT
GGTCCCGAGT TGAAGTTTAA TCAATGTGGT TTGCCCAAAG AAATGGCGTT AGAGTTGTTC
GAGCCATTCA TTATCAAGCG ACTAAAAGAT CAGGGTAGTG TTTATACTAT CCGTTCAGCA
AAGAAAATGA TTCAACGAGG CGCACCAGAG GTTTGGGACG TTCTTGAGGA AATCATTAAA
GGACACCCAG TCTTATTGAA CCGAGCTCCT ACTTTGCACC GATTGGGAAT ACAGGCTTTT
GAGCCAGTGT TGATTGAAGG GAAAGCGATT CGGGTTCACC CATTAGTGTG TGCAGCGTTT
AACGCCGATT TCGATGGAGA CCAAATGGCG GTTCACGTGC CTCTTTCTAT TGAAGCTCAG
TTAGAGGCGA AGGTGTTAAT GATGGCTCCT GATAACATTT TCTTGCCATC TTCTGGAAAA
CCTGTTGCCA CACCTTCTAA GGATATGACA TTGGGCATCT ATTATTTGAT GGCTGATCCA
ACGTATTTTC CTGAAGAACA CGGAGGGAAA ACTAAAGTAT TTAAAGATGA AGTAGAAGTA
CTTCGTGCTT TGAATGCTGG AGGTTTTATC CTTAAGGATG AGATATGTGG TTCTCGTCGG
GATGAAACTG GACGAGGGAT TCATATTCAT GAAGCCATTA AAGTTCGAAT TGATGGTCAA
ATTATTGAGA CCACTCCTGG CCGCGTATTT TTCAACACAA TCGTTCCTAA AGAACTTGGC
TTCCAAAACT ATAGTATGCC AAGTAAACGT ATCAGTGAGC TAATCTTGCA ATGCTATAAG
AAAGTTGGTT TAGAAGCTAC TGTACGCTTT TTGGATGATT TGAAAGAGCT AGGTTTCGTG
CAATCTACGA AAGCTGCAAT TTCTATGGGA TTGAAGGATG TTCGAATTCC TGAAATTAAG
AAAGAGATTT TGAAAGACGC TTACGATAAG GTTGCTGTCG TTAAGAAACA ATATGAAGAC
GGTATTATTA CCGATGGGGA GCGGCATTCC AAGACAATTA GTATCTGGAC TGAAGTTTCC
GATCTTTTAT CTAATGCGTT GTATGCTGAG ATCAAAAAGC AAACCAATAG CAAACATAAT
CCGCTGTTCT TAATGATTGA TTCTGGAGCT AGAGGAAACA AATCTCAGTT GAAACAGCTT
GGAGCTTTGC GGGGATTGAT GGCTAAACCT AACGGAGCCA TTATTGAATC TCCAATTACT
TCTAACTTCC GAGAAGGATT GACAGTGCTT GAGTACTCTA TTTCTTCTCA CGGAGCTAGA
AAAGGATTAG CAGACACAGC GCTTAAAACT GCGGATTCCG GATATTTAAC CCGTCGTTTG
GTGGACGTTG CTCAGGATGT TATCATTACA GAAAAAGATT GTGGTACATT GAATCATATT
GAGGTGTCGA CAATCCGTCA GGGGTCTGAA GAATTACTGC CTTTGAAAGA CCGTATTTAT
GGACGTACAG TTTCTGAAAA TGTCTATCAG CCAGGAGATA AAAGTAACGT TTTAGCCTAT
GCTGGGGATG TATTAACTTC TTCCCAAGCT GAGGCTATTG ATGATGCAGG TATTGATAGC
GTAAAAATCC GATCTACGCT TACTTGTGAA AGCCGGCGAG GAGTTTGTGC CAAGTGTTAT
GGTTTGAACC TTGCTAATGG CCGGCTGATT GGATTAGGAG AAGCTGTTGG TATTATTGCT
GCTCAATCCA TTGGGGAACC TGGAACTCAG TTAACAATGA GAACGTTCCA CCTTGGGGGG
ATTGCTGCGA CATCCTCAAC TCCAGAAATC GTTGCCGAGT GTGATGGAAT TCTTGTTTAC
TTAGACTTAC GCTTTGTTGT AGACCAAGAA GGTAATAATC TTGTTCTGAA TAAGATGGGA
GCTCTTCACT TGGTCCGTGA CGAAGGACGA AGTTTGAGTG AATACAAGAA GCTTTTGAGT
ACGAAGTCCA TCGAAAGCTT AGCGACATTC CCAGTAGAAT TGGGAGCTAA GATTTTGGTT
GATGACGGTG CAGCTGTCAC GGCCGGACAA AGAATTGCTG AAGTTGAGCT CCACAATATC
CCAATTATCT GTGATAAGCC AGGATTCGTT CACTATGAAG ATTTAGTGGA AGGAGTTTCC
ACAGAGAAAG TCACGAATAA GAACACGGGT CTTGTCGAAT TAATTGTGAA ACAACACAGG
GGAGAATTGC ATCCTCAGAT TGCTATATAT GCTGACGCCA ATATGCAGGA ATTGGTTGGT
ACATATGCCA TTCCTTCTGG GGCTATTATC TCTGTTGAAG AGGGGCAACG TATTGCTCCA
GGAATGTTGT TAGCGAGATT GCCTCGAGGA GCAATTAAAA CGAAGGATAT TACTGGTGGT
TTGCCTAGGG TTGCAGAGTT AGTAGAAGCT CGTAAGCCTG AAGATGCCGC GGATATTGCT
AAGATTGATG GGGTTGTAGA CTTCAAAGGT ATCCAGAAGA ATAAGCGTAT TCTTGTTGTG
CGTGATGAAG TTACGGGAAT GGAAGAAGAG CATCTGATTT CTTTGACCAA ACACTTGATC
GTGCAACGTG GAGATAGCGT AATCAAAGGT CAGCAGTTAA CGGACGGTTT AGTCGTTCCT
CATGAAATTC TTGAAATTTG TGGGGTTCGT GAATTGCAGA AATATTTGGT TAATGAGGTT
CAAGAAGTAT ACCGACTGCA AGGTGTGGAC ATTAATGACA AACACATTGA AATTATTGTT
CGACAGATGT TGCAGAAAGT GCGTATTACT GATCCAGGTG ATACAACCTT GTTGTTCGGA
GAGGATGTCG ATAAGAAAGA GTTTTATGAA GAAAACCGCC GTACGGAAGA GGATGGAGGG
AAACCTGCTC AAGCTGTTCC AGTGCTGCTT GGAATCACTA AAGCTTCTTT GGGAACGGAG
TCCTTTATTT CCGCGGCCTC ATTCCAGGAC ACAACTCGAG TTTTAACAGA TGCTGCTTGC
AGTAGTAAGA CAGATTATCT GCTAGGATTC AAAGAGAATG TGATTATGGG GCACATGATC
CCTGGTGGTA CAGGATTTGA TACGCATAAA CGTATTAAGC AGCACCTCGA AAAAGAGCAA
GAAGACTTGG TCTTTGACTT CGATAGTGAG TTTGAGTCTG TAGCAGGCTA A
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| Protein sequence | MFKEGSRDDA ALAKEGLFDK LEIGIASDVT IRDKWSCGEI KKPETINYRT FKPEKGGLFC
EKIFGPTKDW ECYCGKYKKI KHKGIVCDRC GVEVTLSKVR RERMAHIELA VPIVHIWFFK
TTPSRIGNVL GMTASDLERV IYYEEYVVID PGNTDLVKKQ LLNDAKYREV VEKWGKDAFV
AKMGGEAVYD LLKSEDLESL LGELKDRLRK TKSQQARMKL AKRLKIVEGF VSSSNRPEWM
VLKNIPVVPP DLRPLVPLDG GRFATSDLND LYRRVINRNN RLKAILRLKT PEVIVRNEKR
MLQEAVDALF DNGRHGHPVM GAGNRPLKSL SEMLKGKNGR FRQNLLGKRV DYSGRSVIIV
GPELKFNQCG LPKEMALELF EPFIIKRLKD QGSVYTIRSA KKMIQRGAPE VWDVLEEIIK
GHPVLLNRAP TLHRLGIQAF EPVLIEGKAI RVHPLVCAAF NADFDGDQMA VHVPLSIEAQ
LEAKVLMMAP DNIFLPSSGK PVATPSKDMT LGIYYLMADP TYFPEEHGGK TKVFKDEVEV
LRALNAGGFI LKDEICGSRR DETGRGIHIH EAIKVRIDGQ IIETTPGRVF FNTIVPKELG
FQNYSMPSKR ISELILQCYK KVGLEATVRF LDDLKELGFV QSTKAAISMG LKDVRIPEIK
KEILKDAYDK VAVVKKQYED GIITDGERHS KTISIWTEVS DLLSNALYAE IKKQTNSKHN
PLFLMIDSGA RGNKSQLKQL GALRGLMAKP NGAIIESPIT SNFREGLTVL EYSISSHGAR
KGLADTALKT ADSGYLTRRL VDVAQDVIIT EKDCGTLNHI EVSTIRQGSE ELLPLKDRIY
GRTVSENVYQ PGDKSNVLAY AGDVLTSSQA EAIDDAGIDS VKIRSTLTCE SRRGVCAKCY
GLNLANGRLI GLGEAVGIIA AQSIGEPGTQ LTMRTFHLGG IAATSSTPEI VAECDGILVY
LDLRFVVDQE GNNLVLNKMG ALHLVRDEGR SLSEYKKLLS TKSIESLATF PVELGAKILV
DDGAAVTAGQ RIAEVELHNI PIICDKPGFV HYEDLVEGVS TEKVTNKNTG LVELIVKQHR
GELHPQIAIY ADANMQELVG TYAIPSGAII SVEEGQRIAP GMLLARLPRG AIKTKDITGG
LPRVAELVEA RKPEDAADIA KIDGVVDFKG IQKNKRILVV RDEVTGMEEE HLISLTKHLI
VQRGDSVIKG QQLTDGLVVP HEILEICGVR ELQKYLVNEV QEVYRLQGVD INDKHIEIIV
RQMLQKVRIT DPGDTTLLFG EDVDKKEFYE ENRRTEEDGG KPAQAVPVLL GITKASLGTE
SFISAASFQD TTRVLTDAAC SSKTDYLLGF KENVIMGHMI PGGTGFDTHK RIKQHLEKEQ
EDLVFDFDSE FESVAG
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