| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TC0365 |
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| Symbol | sctV |
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| ID | 1245718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlamydia muridarum Nigg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002620 |
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| Strand | - |
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| Start bp | 424400 |
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| End bp | 426526 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637061166 |
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| Product | type III secretion inner membrane protein SctV |
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| Protein accession | NP_296743 |
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| Protein GI | 15834984 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.371856 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGC TACTCAATTT TGTCAGTAGA ACATTCGGGG GAGACGCGGC CCTGAACATG
ATAAACAAGT CCAGCGACCT CATCCTTGCT ATGTGGATGT TGGGCGTGGT CTTGATGATC
ATTATGCCAT TGCCTCCAGT TATGGTGGAT TTCATGATCA CCATCAACTT GGCAATCTCC
GTATTCCTGC TGATGGTTGC CTTATATATT CCTAGCGCAT TGCAACTCTC GGTTTTCCCT
TCCCTACTCC TAATCACCAC AATGTTCCGA TTAGGAATTA ACATCTCTTC TTCCAGACAA
ATTCTCCTTC ATGCTTATGC AGGGAACGTG ATTCAGGCCT TCGGGGACTT CGTCGTTGGA
GGAAACTATG TCGTTGGATT TATTATCTTC CTAATCATCA CCATCATACA GTTTATTGTG
GTTACTAAAG GTGCGGAAAG GGTCGCTGAG GTTGCTGCTC GATTCCGATT AGATGCGATG
CCTGGTAAAC AGATGGCTAT TGATGCTGAC CTTCGTGCGG GGATGATTGA TGCCACACAA
GCTCGCGATA AACGAGCTCA AATTCAGAAG GAAAGTGAAC TTTACGGAGC CATGGACGGA
GCCATGAAGT TCATCAAAGG AGACGTTATT GCCGGTATCG TCATCTCCTT GATTAACATC
GTCGGAGGGT TAGTCATTGG TGTCACAATG AAAGGCATGA CAATGGCTCA AGCTGCTCAC
ATTTACACCC TCATTACTAT TGGGGATGGA TTAGTTTCCC AAATTCCCTC CCTATTGATC
TCTTTAACCG CTGGTATCGT AACTACTCGA GTATCTAGTG ATAAAGATAC AAACCTCGGG
AAAGAAATTT CTAGCCAGTT GGTTAAAGAA CCTAGAGCCT TACTCCTCTC TGCGGTAGCT
ACCTTAGGAA TCGGTTTTTT TAAAGGATTC CCTTTATGGT CATTTGCCCT AATGGCTGTT
GTTTTTGCAG TATTAGGTAT TTTGTTAATC ACCAAGAAAA ATTCTCCTGG CAAAAAGGGA
AGTTCCAGTT CTTCTACTAC CGTAGGTGCT GCTGACGGAG CATCGGCCTC AGGAGAAAAC
TCCGATGATT ATGCGCTTAC TCTTCCTGTA ATTCTCGAAC TTGGTAAAGA TCTTTCCAAA
CTTATTCAGC AAAGAACAAA ATCAGGGCAA AGCTTTGTGG ATGATATGAT TCCTAAAATG
CGCCAAGCTC TTTATCAAGA TATTGGAATT CGCTATCCAG GAATCCACGT ACGAACAGAT
TCCCCTTCTT TAGAAGGGAA TGATTATATG ATTCTTCTTA ACGAAGTCCC CTATGTTCGA
GGGAAAATTC CTCCTAACCA CGTTTTAACA AACGAAGTGG AAGAAAACCT TTCTCGTTAT
AATCTACCTT TTATCACTTA CAAAAATGCT GCAGGTTTGC CTTCAACTTG GGTCAGCACC
GATGCTCTTA CTATTTTAGA AAAAGCAGCT ATTAAGTACT GGTCTCCTTT GGAAGTGATT
ATTCTTCATC TTTCTTACTT CTTCCATAGA AACTCTCAAG AGTTTCTAGG AATTCAGGAA
GTTCGTTCTA TGATTGAATT TATGGAACGA TCTTTCCCTG ATCTTGTTAA AGAAGTTACA
CGCCTTATTC CTCTGCAGAA GCTTACAGAA ATTTTCAAGC GTTTAGTTCA GGAGCAAATT
TCCATCAAAG ATTTGCGAAC CATTTTAGAA TCTTTAAGCG AATGGGCCCA AACTGAGAAA
GATACTGTAT TACTGACAGA GTATGTACGT TCTTCCTTGA AACTTTATAT CAGCTTCAAA
TTTTCTCAAG GGCAATCAGC AATTTCAGTC TACCTGTTAG ATCCTGAAAT TGAAGAGATG
ATTCGTGGCG CTATTAAACA AACTTCTGCG GGCTCTTATT TGGCCTTAGA TCCAGATTCC
GTAAACCTCA TTTTAAAATC CATGCGAATG ACTATTACCC CAACACCTCC TGGAGGCCAA
CCCCCAGTAC TGTTGACAGC AATTGACGTC AGACGCTATG TACGAAAATT AATAGAGACA
GAATTTCCTG ATATTGCTGT GATTTCTTAT CAAGAGGTCT TACCTGAAAT TAGAATCCAG
CCTTTAGGAA GAATTCAAAT TTTCTAA
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| Protein sequence | MNKLLNFVSR TFGGDAALNM INKSSDLILA MWMLGVVLMI IMPLPPVMVD FMITINLAIS
VFLLMVALYI PSALQLSVFP SLLLITTMFR LGINISSSRQ ILLHAYAGNV IQAFGDFVVG
GNYVVGFIIF LIITIIQFIV VTKGAERVAE VAARFRLDAM PGKQMAIDAD LRAGMIDATQ
ARDKRAQIQK ESELYGAMDG AMKFIKGDVI AGIVISLINI VGGLVIGVTM KGMTMAQAAH
IYTLITIGDG LVSQIPSLLI SLTAGIVTTR VSSDKDTNLG KEISSQLVKE PRALLLSAVA
TLGIGFFKGF PLWSFALMAV VFAVLGILLI TKKNSPGKKG SSSSSTTVGA ADGASASGEN
SDDYALTLPV ILELGKDLSK LIQQRTKSGQ SFVDDMIPKM RQALYQDIGI RYPGIHVRTD
SPSLEGNDYM ILLNEVPYVR GKIPPNHVLT NEVEENLSRY NLPFITYKNA AGLPSTWVST
DALTILEKAA IKYWSPLEVI ILHLSYFFHR NSQEFLGIQE VRSMIEFMER SFPDLVKEVT
RLIPLQKLTE IFKRLVQEQI SIKDLRTILE SLSEWAQTEK DTVLLTEYVR SSLKLYISFK
FSQGQSAISV YLLDPEIEEM IRGAIKQTSA GSYLALDPDS VNLILKSMRM TITPTPPGGQ
PPVLLTAIDV RRYVRKLIET EFPDIAVISY QEVLPEIRIQ PLGRIQIF
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