Gene TC0344 details

Gene Information

• Locus tag: TC0344
• ID: 1246387
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlamydia muridarum Nigg
• Kingdom: Bacteria
• Replicon accession: NC_002620
• Strand: +
• Start bp: 406259
• End bp: 408118
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637061145
• Product: hypothetical protein
• Protein accession: NP_296722
• Protein GI: 15834963
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0750] Predicted membrane-associated Zn-dependent proteases 1
• TIGRFAM ID: [TIGR00054] RIP metalloprotease RseP

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.167454
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGTAA TATATTTTGT TCTTGCAGCC CTGGCCTTAG GCTTTCTGAT TTTAATTCAT 
GAACTAGGCC ATTTGTTAGC AGCGAAAGCT GTAGGAATGA CTGTAGAAAG TTTCAGTATA 
GGGTTTGGAC CTGCACTTGT TCGAAAAAAA ATGGGGAGTA TTGAATACCG GATAGGGGCA 
ATTCCTTTTG GAGGATATGT TCGTATCAAA GGTATGGACA GAAATGATAA AGAAATATCT 
GAAGACAGGG AGAAAACGGT TTATGATATC CCTGGAGGAT TTTTTAGTAA GTCTCCATGG 
AAACGTATCT TCGTTTTAGC TGCAGGTCCT CTAGCTAATA TACTGGTGGC CCTATTTGCT 
TTCGGGATTC TCTATTTTTC TGGAGGAAGA ACAAAACCTT TTTCTGAACA CACCAGTATT 
GTTGGGTGGG CTCATCCTTC TTTGGAGCAA AAGGGATTAC GTCCAGGGGA TCGTATTTTC 
TTGTGTAATG GGCAGGTCTA CTCTGGGAAT AAGATGGCGT TTTCGTCTTC TTTGCTTGAT 
AGAAAATTAT CATTGCAAGG GGAGCATCCT GCTTACTTCT CTGAAGCGGA GTCATTTTCT 
CTAGACGTAC CATTTAATCC TAGCTTAGAA GGAGTCCCTT GTTTAGGGGC TAGCTATTTA 
CTGTATCGTG GTTCTGAGCC TTTGCCTGAA AAATCTCCTT TGATAGATGC AGGATTATCT 
GAAGGGGATC GTCTAGTATG GATGGACGGT GCTTTGGTAT TTTCTGGCGT GCAGGTTTCT 
CAAATTCTCA ATGAGAAAAA AGCTTTTTTG CGAATCGAAC GTCAGGGAAA GATCGTATTC 
GTTCGTCAAT CTAGGGTTTT GGCGGGGGAT CTTCAGCTCA CTTCATATTT TAAGAATGAG 
CTGATTGATT GTCAGTATGA GGCGGGGCTT AAAGGAAAAT GGGCTTCTCT ATACATGTTG 
CCTTACATTA TTAATAGTGA TGGTTTTGTT GAAAGTAAGA TCAATCTGCT AAACACGGAT 
CAGCAGTCCT TAGATTATCA TCTGGAGTTA GGAGATAGAA TTGTTGCTGT AGATGGAATT 
CCTGTTATGA GCAATGCAGA TATTTTGCGT CTTGTTCAAG ATCACAGGGT TTCTTTGATT 
TTTCAGAGGA TGTCTTCGGG ACAGCTCTCT GTTTTGGATC AAAAAGCTGC AGACAAAGCA 
TTTATTGATT CCTATGATAT GGACGATCTT CTGCGTGTTG CAGGGTCTGT AGGAGAAGAA 
CGGGAGGTAT CTCACTTAGG AGAGTATCGT CTGGTAACTC GAGTACAGCC TAAGCCATGG 
GTGCATATTT ATTCTGAAGA ATTATTAGAT AAACAGCGTG CCCTTGCGTC TAAATTCCGA 
GATGAGCAAG AGAAGCGCTA TTACTTAGAA AGAATAGAAT CCGAAAAACA GCGCATTTCT 
TTGGGCATTC CCCTTAAGGA TCTCGCTGTG CAGTATAATC CAGCTCCCTT AGTTTTGATG 
GGAGAATCCA TTTCTGATAG CTTAAGGACT GTAAAGGCCT TAGGATCTGG CCGGCTGAGT 
CCTCAATGGC TTTCAGGGCC TGTGGGAATT GTCCGTATTC TACATACAGG ATGGTCTATG 
GGGATTCCCG AGGCTCTATC TTGGATCGGA TTGATCAGCA TAAACCTAGC AGTATTGAAT 
CTCCTCCCTA TACCGGTTTT GGATGGGGGT TATATACTTT TATGCTTATG GGAGAGCGTT 
TCTAGACGTC GGTTAAATAT GCGACTCATT GAAAAAGGAC TAGTCCCATT TATGATTCTG 
CTGATCTTAT TTTTTGTGTT CTTGACCCTC CAGGATCTTT CCAGAGTTTT CATTGGATGA 

 

Protein sequence

MTVIYFVLAA LALGFLILIH ELGHLLAAKA VGMTVESFSI GFGPALVRKK MGSIEYRIGA 
IPFGGYVRIK GMDRNDKEIS EDREKTVYDI PGGFFSKSPW KRIFVLAAGP LANILVALFA 
FGILYFSGGR TKPFSEHTSI VGWAHPSLEQ KGLRPGDRIF LCNGQVYSGN KMAFSSSLLD 
RKLSLQGEHP AYFSEAESFS LDVPFNPSLE GVPCLGASYL LYRGSEPLPE KSPLIDAGLS 
EGDRLVWMDG ALVFSGVQVS QILNEKKAFL RIERQGKIVF VRQSRVLAGD LQLTSYFKNE 
LIDCQYEAGL KGKWASLYML PYIINSDGFV ESKINLLNTD QQSLDYHLEL GDRIVAVDGI 
PVMSNADILR LVQDHRVSLI FQRMSSGQLS VLDQKAADKA FIDSYDMDDL LRVAGSVGEE 
REVSHLGEYR LVTRVQPKPW VHIYSEELLD KQRALASKFR DEQEKRYYLE RIESEKQRIS 
LGIPLKDLAV QYNPAPLVLM GESISDSLRT VKALGSGRLS PQWLSGPVGI VRILHTGWSM 
GIPEALSWIG LISINLAVLN LLPIPVLDGG YILLCLWESV SRRRLNMRLI EKGLVPFMIL 
LILFFVFLTL QDLSRVFIG