| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TC0197 |
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| Symbol | pmpD |
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| ID | 1246323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlamydia muridarum Nigg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002620 |
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| Strand | + |
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| Start bp | 229856 |
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| End bp | 234418 |
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| Gene Length | 4563 bp |
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| Protein Length | 1520 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637060994 |
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| Product | polymorphic membrane protein D family protein |
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| Protein accession | NP_296576 |
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| Protein GI | 15834817 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat
[TIGR01414] outer membrane autotransporter barrel domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCCG AGAAAGATAA AAAAAACTCC TGTTCTAAGT TTTCCTTATC GGTAGTAGCA
GCTATTCTCG CTTCTATGAG TGGTTTATCG AATTGTTCCG ATCTTTATGC CGTAGGAAGT
TCTGCAGACC ATCCTGCCTA CTTGATTCCT CAAGCGGGGT TATTATTGGA TCATATTAAG
GATATATTCA TTGGCCCTAA AGATAGTCAG GATAAGGGGC AGTATAAGTT GATTATTGGT
GAGGCTGGCT CTTTCCAAGA TAGTAATGCA GAGACTCTTC CTCAAAAGGT AGAGCACAGC
ACTTTGTTTT CAGTTACAAC ACCTATAATT GTGCAAGGAA TAGATCAACA AGATCAGGTC
TCTTCGCAGG GATTGGTCTG TAATTTTTCA GGAGATCATT CAGAGGAGAT TTTTGAGAGA
GAATCCTTTT TAGGGATCGC TTTCCTAGGG AATGGTAGCA AGGATGGAAT CACGTTAACA
GATATAAAAT CTTCGTTATC TGGTGCTGCC TTGTATTCTT CAGATGATCT TATTTTTGAA
AGAATTAAGG GAGATATAGA GCTTTCTTCT TGTTCATCTT TAGAAAGAGG AGGAGCTTGT
TCAGCTCAAA GTATTTTAAT TCATGATTGT CAAGGATTAA CGGTAAAACA TTGTGCCGCA
GGGGTGAATG TTGAAGGAGT TAGTGCTAGC GACCATCTCG GATTTGGGGG CGGGGCCTTC
TCTACTACAA GTTCTCTTTC TGGAGAGAAG AGTTTGTATA TGCCTGCAGG CGATATTGTG
GTGGCTACCT GCGATGGTCC TGTGTGTTTC GAAGGAAATA GTGCTCAGTT AGCAAATGGT
GGCGCTATTG CCGCTTCTGG TAAAGTTCTT TTTGTAGCTA ACGAAAAAAA GATTTCCTTT
ACAGACAACC AAGCTTTGTC TGGAGGAGCT ATTTCTGCAT CTTCTAGTAT TTCTTTCCAA
AATTGTGCTG AGCTTGTGTT CAAGAGTAAT CTTGCAAAAG GAGTTAAAGA TAAATGTTCT
TTGGGAGGAG GTGCTTTAGC CTCTTTAGAA TCCGTAGTTT TGAAAGATAA TCTCGGTATT
ACTTATGAAA AAAATCAGTC CTATTCGGAA GGAGGGGCTA TTTTTGGGAA GGATTGTGAG
ATTTTTGAAA ACAGGGGGCC TGTTGTATTC AGAGATAATA CAGCTGCTTT AGGAGGCGGA
GCTATTTTGG CGCAACAAAC TGTGGCGATT TGTGGTAATA AGTCTGGAAT ATCTTTTGAA
GGAAGTAAGT CTAGTTTTGG AGGGGCCATT GCTTGTGGAA ATTTCTCTTC TGAGAATAAT
TCTTCAGCTT TGGGATCAAT TGATATCTCT AACAATCTAG GAGATATCTC TTTTCTTCGG
ACTCTGTGTA CTACTTCGGA TTTAGGGCAA ACGGATTACC AAGGGGGAGG GGCCTTATTC
GCTGAAAATA TTTCTCTTTC TGAGAATGCT GGTGCAATTA CTTTCAAAGA CAATATTGTG
AAGACATTTG CCTCAAATGG AAAAATGTTG GGTGGAGGGG CAATTTTAGC TTCAGGAAAT
GTTTTGATTA GCAAAAACTC TGGAGAGATT TCTTTTGTAG GGAATGCTCG AGCTCCTCAG
GCTATTCCGA CTCGTTCATC TGACGAATTG TCTTTTGGCG CACAATTAAC TCAAACTACT
TCAGGATGTT CTGGAGGAGG AGCTCTTTTT GGTAAAGAGG TTGCCATTGT TCAAAATGCC
ACTGTTGTAT TCGAGCAAAA TCGCTTACAG TGTGGCGAGC AGGAAACACA TGGTGGAGGC
GGTGCTGTTT ATGGTATGGA GAGTGCCTCT ATTATTGGAA ACTCTTTTGT GAGATTCGGA
AATAATTACG CTGTAGGGAA TCAGATTTCT GGAGGAGCTC TTTTATCCAA GAAGGTCCGT
TTAGCTGAAA ATACAAGGGT AGATTTTTCT CGAAATATCG CTACTTTCTG CGGCGGGGCT
GTTCAAGTTT CTGATGGAAG TTGCGAATTG ATCAACAATG GGTATGTGCT ATTCAGAGAT
AACCGAGGGC AGACATTTGG TGGGGCTATT TCTTGCTTGA AAGGAGATGT GATCATTTCC
GGAAATAAAG ATAGGGTTGA GTTTAGAGAT AACATTGTGA CGCGGCCTTA TTTTGAAGAA
AATGAAGAAA AAGTTGAGAC AGCAGATATT AATTCAGATA AGCAAGAAGC AGAAGAGCGC
TCTTTATTAG AGAACATTGA GCAGAGCTTT ATTACTGCAA CTAATCAGAC CTTTTTCTTA
GAGGAAGAGA AACTCCCATC AGAAGCTTTT ATCTCTGCTG AAGAACTTTC AAAGAGAAGA
GAATGTGCTG GTGGGGCGAT TTTTGCAAAA CGGGTCTACA TTACGGATAA TAAAGAACCT
ATCTTGTTTT CGCATAATTT TTCTGATGTT TATGGGGGAG CTATTTTTAC GGGTTCTCTA
CAGGAAACTG ATAAACAAGA TGTTGTAACT CCTGAAGTTG TGATATCAGG CAACGATGGG
GATGTCATTT TTTCTGGAAA TGCAGCTAAA CATGATAAGC ATTTACCTGA TACAGGTGGT
GGAGCCATTT GTACACAGAA TTTGACGATT TCCCAAAACA ATGGGAATGT CTTGTTCTTG
AACAATTTTG CTTGTTCTGG TGGAGCAGTT CGCATAGAGG ATCATGGAGA AGTTCTTTTA
GAGGCTTTTG GGGGAGATAT TATTTTCAAT GGAAACTCTT CTTTCAGAGC TCAAGGATCG
GATGCGATCT ATTTTGCTGG TAAGGACTCT AGAATTAAAG CTTTAAATGC TACTGAAGGA
CATGCGATTG TGTTCCAAGA TGCATTGGTG TTTGAAAATA TAGAAGAAAG AAAGTCTTCG
GGACTATTGG TGATTAACTC TCAGGAAAAT GAGGGTTATA CGGGATCCGT CCGATTTTTA
GGATCTGAAA GTAAGGTTCC TCAATGGATT CATGTGCAAC AGGGAGGTCT TGAGTTGCTA
CATGGAGCTA TTTTATGTAG TTATGGGGTT AAACAAGATC CTAGAGCTAA AATAGTATTA
TCTGCTGGAT CTAAATTGAA GATTCTAGAT TCAGAGCAAG AAAATAACGC AGAAATTGGA
GATCTTGAAG ATTCTGTTAA TTCAGAAAAA ACACCATCTC TTTGGATTGG GAAGAACGCT
CAAGCAAAAG TCCCTCTGGT TGATATCCAT ACTATTTCTA TTGATTTAGC ATCATTTTCT
TCTAAAGCTC AGGAAACCCC TGAGGAAGCT CCACAAGTCA TCGTCCCTAA GGGAAGTTGT
GTCCACTCGG GAGAGTTAAG TTTGGAGTTG GTTAATACAA CAGGAAAAGG TTATGAGAAT
CATGCGTTGT TAAAAAATGA TACTCAGGTT TCTCTCATGT CTTTCAAAGA GGAAAATGAT
GGATCTTTAG AAGATTTGAG TAAGTTGTCT GTTTCGGATT TACGCATTAA AGTTTCTACT
CCAGATATTG TAGAAGAAAC TTATGGCCAT ATGGGGGATT GGTCTGAAGC TACAATTCAA
GATGGGGCTC TTGTCATTAA TTGGCATCCT ACTGGATATA AATTAGATCC GCAAAAAGCT
GGTTCTTTGG TATTCAATGC ATTATGGGAG GAAGAGGCTG TATTGTCTAC TCTAAAAAAT
GCTCGGATTG CCCATAACCT TACCATTCAG AGAATGGAAT TTGATTATTC TACAAATGCT
TGGGGATTAG CTTTTAGTAG CTTTAGAGAG CTATCTTCAG AGAAGCTTGT TTCTGTTGAT
GGATATAGAG GCTCTTATAT AGGGGCTTCT GCAGGCATTG ATACTCAGTT GATGGAAGAT
TTTGTTTTGG GAATCAGCAC GGCTTCCTTC TTCGGGAAAA TGCATAGTCA GAATTTTGAT
GCAGAGATTT CTCGACATGG TTTTGTTGGT TCGGTCTATA CAGGCTTCCT AGCTGGGGCC
TGGTTCTTCA AGGGGCAGTA CAGTCTTGGC GAAACACATA ACGATATGAC AACTCGTTAC
GGGGTTTTGG GAGAATCTAA TGCTACTTGG AAGTCTCGAG GAGTACTAGC AGATGCTTTA
GTTGAATATC GTAGTTTAGT CGGTCCAGCA CGACCTAAAT TTTATGCTTT GCATTTTAAT
CCTTATGTCG AGGTATCTTA TGCATCTGCG AAGTTCCCTA GTTTTGTAGA ACAAGGAGGA
GAAGCTCGTG CTTTTGAAGA AACCTCTTTA ACAAACATTA CCGTTCCCTT TGGTATGAAA
TTTGAACTAT CTTTTACAAA AGGACAGTTT TCAGAGACTA ATTCTCTTGG AATAGGTTGT
GCATGGGAAA TGTATCGGAA AGTCGAAGGA AGATCTGTAG AGCTACTAGA AGCTGGTTTT
GATTGGGAAG GATCTCCTAT AGATCTCCCT AAACAAGAGC TGAGAGTGGC TTTAGAAAAC
AATACGGAAT GGAGTTCGTA TTTTAGTACA GCTCTAGGAG TAACAGCATT TTGTGGAGGA
TTTTCTTCTA TGGATAATAA ACTAGGATAC GAAGCGAATG CTGGAATGCG TTTGATTTTC
TAG
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| Protein sequence | MSSEKDKKNS CSKFSLSVVA AILASMSGLS NCSDLYAVGS SADHPAYLIP QAGLLLDHIK
DIFIGPKDSQ DKGQYKLIIG EAGSFQDSNA ETLPQKVEHS TLFSVTTPII VQGIDQQDQV
SSQGLVCNFS GDHSEEIFER ESFLGIAFLG NGSKDGITLT DIKSSLSGAA LYSSDDLIFE
RIKGDIELSS CSSLERGGAC SAQSILIHDC QGLTVKHCAA GVNVEGVSAS DHLGFGGGAF
STTSSLSGEK SLYMPAGDIV VATCDGPVCF EGNSAQLANG GAIAASGKVL FVANEKKISF
TDNQALSGGA ISASSSISFQ NCAELVFKSN LAKGVKDKCS LGGGALASLE SVVLKDNLGI
TYEKNQSYSE GGAIFGKDCE IFENRGPVVF RDNTAALGGG AILAQQTVAI CGNKSGISFE
GSKSSFGGAI ACGNFSSENN SSALGSIDIS NNLGDISFLR TLCTTSDLGQ TDYQGGGALF
AENISLSENA GAITFKDNIV KTFASNGKML GGGAILASGN VLISKNSGEI SFVGNARAPQ
AIPTRSSDEL SFGAQLTQTT SGCSGGGALF GKEVAIVQNA TVVFEQNRLQ CGEQETHGGG
GAVYGMESAS IIGNSFVRFG NNYAVGNQIS GGALLSKKVR LAENTRVDFS RNIATFCGGA
VQVSDGSCEL INNGYVLFRD NRGQTFGGAI SCLKGDVIIS GNKDRVEFRD NIVTRPYFEE
NEEKVETADI NSDKQEAEER SLLENIEQSF ITATNQTFFL EEEKLPSEAF ISAEELSKRR
ECAGGAIFAK RVYITDNKEP ILFSHNFSDV YGGAIFTGSL QETDKQDVVT PEVVISGNDG
DVIFSGNAAK HDKHLPDTGG GAICTQNLTI SQNNGNVLFL NNFACSGGAV RIEDHGEVLL
EAFGGDIIFN GNSSFRAQGS DAIYFAGKDS RIKALNATEG HAIVFQDALV FENIEERKSS
GLLVINSQEN EGYTGSVRFL GSESKVPQWI HVQQGGLELL HGAILCSYGV KQDPRAKIVL
SAGSKLKILD SEQENNAEIG DLEDSVNSEK TPSLWIGKNA QAKVPLVDIH TISIDLASFS
SKAQETPEEA PQVIVPKGSC VHSGELSLEL VNTTGKGYEN HALLKNDTQV SLMSFKEEND
GSLEDLSKLS VSDLRIKVST PDIVEETYGH MGDWSEATIQ DGALVINWHP TGYKLDPQKA
GSLVFNALWE EEAVLSTLKN ARIAHNLTIQ RMEFDYSTNA WGLAFSSFRE LSSEKLVSVD
GYRGSYIGAS AGIDTQLMED FVLGISTASF FGKMHSQNFD AEISRHGFVG SVYTGFLAGA
WFFKGQYSLG ETHNDMTTRY GVLGESNATW KSRGVLADAL VEYRSLVGPA RPKFYALHFN
PYVEVSYASA KFPSFVEQGG EARAFEETSL TNITVPFGMK FELSFTKGQF SETNSLGIGC
AWEMYRKVEG RSVELLEAGF DWEGSPIDLP KQELRVALEN NTEWSSYFST ALGVTAFCGG
FSSMDNKLGY EANAGMRLIF
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