Gene TC0043 details

Gene Information

• Locus tag: TC0043
• Symbol: sctQ
• ID: 1245568
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlamydia muridarum Nigg
• Kingdom: Bacteria
• Replicon accession: NC_002620
• Strand: +
• Start bp: 47565
• End bp: 48686
• Gene Length: 1122 bp
• Protein Length: 373 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637060832
• Product: type III secretion system protein
• Protein accession: NP_296427
• Protein GI: 15834668
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1886] Flagellar motor switch/type III secretory pathway protein
• TIGRFAM ID: [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.926613
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGTTG CAGCAGAGCC TAGTAGTAAT TGGTTGAAAG CTAGAGACGA GTTACTAAGT 
TCTTTGCAAA AACAGGACGA AGGGAGTTTC TCCCTTCCTG TTTTCCCAAA GCAGGAGTGT 
GAGCAGAAAC TGAAAGAGAA ATTCCACTTA GAAGAGGTGG AACTCTCTTT TGAGTCGCAA 
GGGCTCTTGT CTGCTGCACC TGCTGTGCAG GAATACGGAG AGCATGTTTT GCTTCAGCCA 
TTTTTGGCAA ATCCCTTTGA ATCAGGAGAG TTTTATATTG TTTCTTCAGA AGAAGATTTG 
CAAGCATTGA TAGGGACCAT TTTTAATGAT AGTTCCCTAG CTTCTTACTT CTATGAAAAA 
GATCGGTTAT TGGGGTTCCA TTACTATTTT GTTGCCGAGA TCTGCAAGCT TTTGCAAGAG 
GTCTCTTGGA TCCCTTCCAT GGCAGTGAAG GTAACAGGGG ATGTTGCATT TTCTGCTCGT 
GCTTTAGAAG GGGACTATCA TGTTGTGCAA GTCACTTGTC GTTTAGATAG CTCTTATGTG 
CGTTTTTCTG TTTTGGTTCC TGACACAACA GCCCAGAGTG TCTATAAATT CTTAGAAGAG 
AAGAATCAGA CTTTCGATAT CCAAAAAATC GATATGCAAA CTCCTGTTAC TCTCTCTGTA 
GAAGTAGGGT TTTGTCAGAT CTCAGAAGAA GATTGGCACC AAGTTGTTCC CGGCAGTTTT 
ATTTTGTTAG ATGCTTGTTT GTATGATCCA GATACGGGCG ATGCGGGAGC TTTCTTATCG 
ATTCAGCGTA CTCGGTTTTT TGGTGGACGG TTTTTAGACA AGCAGTCGGG AGATTTTAAA 
ATTACTGGAT TGCAAGAACT TCAGCCAGAA GATGCTCCTG AGGAACACAG CGAAGGAGGC 
CCAGCAGCTC CTTTACCATC CGCGACAAAA ATTGTTGCAG AGGTTGCTCG CTATACTCTT 
TCTGTTGGAG AATTTTTGAA GCTAGAACCC GGAAGCATTT TGCATTTTGA AGGCATGCAT 
CCTACTTTAG GGGTAGATAT CATTCTGAAC GGGGCTAAAG TGGGTCGTGG CAATATTATT 
GCTCTGCAAG ATGTGCTAGG AATTCGAGTT TTAGAAGTAT AA 

 

Protein sequence

MAVAAEPSSN WLKARDELLS SLQKQDEGSF SLPVFPKQEC EQKLKEKFHL EEVELSFESQ 
GLLSAAPAVQ EYGEHVLLQP FLANPFESGE FYIVSSEEDL QALIGTIFND SSLASYFYEK 
DRLLGFHYYF VAEICKLLQE VSWIPSMAVK VTGDVAFSAR ALEGDYHVVQ VTCRLDSSYV 
RFSVLVPDTT AQSVYKFLEE KNQTFDIQKI DMQTPVTLSV EVGFCQISEE DWHQVVPGSF 
ILLDACLYDP DTGDAGAFLS IQRTRFFGGR FLDKQSGDFK ITGLQELQPE DAPEEHSEGG 
PAAPLPSATK IVAEVARYTL SVGEFLKLEP GSILHFEGMH PTLGVDIILN GAKVGRGNII 
ALQDVLGIRV LEV