| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_4247 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | + |
|---|
| Start bp | 4612249 |
|---|
| End bp | 4613865 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | |
|---|
| Product | porin LamB type |
|---|
| Protein accession | ACX41845 |
|---|
| Protein GI | 260451423 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGAC GAAATCTTAT TACCTCTGCC ATCTTATTAA TGGCACCGTT AGCCTTTTCT
GCACAATCAT TGGCTGAATC ATTAACGGTG GAACAACGCC TTGAGTTATT AGAAAAGGCG
TTAAGAGAAA CGCAAAGCGA ACTCAAAAAG TATAAAGATG AAGAGAAGAA AAAGTATACG
CCAGCGACGG TGAATCGTAG CGTAAGTACG AATGATCAAG GGTATGCCGC CAATCCGTTC
CCGACCAGTA GTGCCGCAAA ACCTGATGCT GTACTGGTCA AAAATGAAGA GAAAAATGCC
AGTGAGACAG GCTCGATTTA TTCTTCCATG ACTCTGAAAG ATTTCAGTAA ATTTGTGAAA
GATGAAATTG GCTTTAGTTA CAACGGCTAT TACCGTTCTG GTTGGGGGAC CGCCTCTCAT
GGTTCACCTA AATCATGGGC GATTGGTTCT CTGGGCCGCT TTGGTAACGA ATACTCCGGC
TGGTTTGATT TGCAGTTAAA ACAACGTGTC TACAACGAAA ACGGCAAACG GGTTGATGCC
GTTGTGATGA TGGATGGTAA CGTTGGTCAG CAGTACTCTA CCGGCTGGTT TGGCGATAAC
GCCGGTGGCG AGAACTATAT GCAGTTCTCC GATATGTACG TTACCACCAA AGGTTTCCTG
CCCTTTGCGC CAGAGGCTGA TTTCTGGGTG GGTAAACACG GTGCGCCGAA AATTGAAATC
CAGATGCTTG ACTGGAAAAC GCAGCGTACT GATGCCGCAG CGGGTGTAGG TCTGGAAAAC
TGGAAAGTCG GTCCGGGTAA AATTGATATC GCGCTGGTTC GCGAAGATGT CGATGATTAC
GATCGCAGCC TGCAAAACAA ACAGCAGATT AATACCAATA CCATTGATTT ACGCTATAAA
GATATCCCGT TATGGGATAA AGCCACCTTA ATGGTAAGTG GTCGTTATGT CACGGCAAAC
GAAAGCGCAT CGGAAAAAGA TAATCAGGAT AATAACGGGT ATTATGACTG GAAAGATACC
TGGATGTTTG GCACATCTTT AACGCAGAAA TTTGATAAAG GTGGCTTCAA CGAATTCTCC
TTCCTGGTCG CGAATAACTC TATCGCCAGT AACTTTGGCC GTTATGCTGG CGCAAGTCCA
TTTACCACCT TTAATGGTCG TTATTATGGT GATCACACCG GCGGAACAGC GGTACGTCTG
ACTTCGCAGG GCGAAGCCTA TATTGGCGAT CATTTCATTG TAGCTAACGC GATTGTTTAC
TCCTTCGGTA ACGATATATA TAGCTACGAA ACAGGCGCCC ACTCTGATTT CGAATCTATT
CGTGCGGTTG TTCGCCCGGC CTATATTTGG GACCAATATA ACCAGACAGG TGTTGAACTG
GGCTATTTCA CCCAGCAAAA CAAAGATGCG AATAGTAATA AATTTAATGA GTCTGGTTAT
AAAACCACGC TCTTCCATAC CTTTAAAGTC AATACCAGTA TGTTGACCTC GCGTCCGGAA
ATTCGTTTCT ACGCCACGTA TATCAAAGCC CTGGAAAACG AACTGGATGG CTTCACCTTT
GAAGACAATA AAGACGACCA GTTTGCTGTC GGTGCCCAGG CTGAAATCTG GTGGTAA
|
|---|
| Protein sequence | MFRRNLITSA ILLMAPLAFS AQSLAESLTV EQRLELLEKA LRETQSELKK YKDEEKKKYT
PATVNRSVST NDQGYAANPF PTSSAAKPDA VLVKNEEKNA SETGSIYSSM TLKDFSKFVK
DEIGFSYNGY YRSGWGTASH GSPKSWAIGS LGRFGNEYSG WFDLQLKQRV YNENGKRVDA
VVMMDGNVGQ QYSTGWFGDN AGGENYMQFS DMYVTTKGFL PFAPEADFWV GKHGAPKIEI
QMLDWKTQRT DAAAGVGLEN WKVGPGKIDI ALVREDVDDY DRSLQNKQQI NTNTIDLRYK
DIPLWDKATL MVSGRYVTAN ESASEKDNQD NNGYYDWKDT WMFGTSLTQK FDKGGFNEFS
FLVANNSIAS NFGRYAGASP FTTFNGRYYG DHTGGTAVRL TSQGEAYIGD HFIVANAIVY
SFGNDIYSYE TGAHSDFESI RAVVRPAYIW DQYNQTGVEL GYFTQQNKDA NSNKFNESGY
KTTLFHTFKV NTSMLTSRPE IRFYATYIKA LENELDGFTF EDNKDDQFAV GAQAEIWW
|
|---|
| |