Gene EcDH1_3978 details

Gene Information

• Locus tag: EcDH1_3978
• ID: 0
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli DH1
• Kingdom: Bacteria
• Replicon accession: CP001637
• Strand: -
• Start bp: 4286959
• End bp: 4290642
• Gene Length: 3684 bp
• Protein Length: 1227 aa
• Translation table: 11
• GC content: 56%
• Product: methionine synthase
• Protein accession: ACX41578
• Protein GI: 260451156

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCAGCA AAGTGGAACA ACTGCGTGCG CAGTTAAATG AACGTATTCT GGTGCTGGAC 
GGCGGTATGG GCACCATGAT CCAGAGTTAT CGACTGAACG AAGCCGATTT TCGTGGTGAA 
CGCTTTGCCG ACTGGCCATG CGACCTCAAA GGCAACAACG ACCTGCTGGT ACTCAGTAAA 
CCGGAAGTGA TCGCCGCTAT CCACAACGCC TACTTTGAAG CGGGCGCGGA TATCATCGAA 
ACCAACACCT TCAACTCCAC GACCATTGCG ATGGCGGATT ACCAGATGGA ATCCCTGTCG 
GCGGAAATCA ACTTTGCGGC GGCGAAACTG GCGCGAGCTT GTGCTGACGA GTGGACCGCG 
CGCACGCCAG AGAAACCGCG CTACGTTGCC GGTGTTCTCG GCCCGACCAA CCGCACGGCG 
TCTATTTCTC CGGACGTCAA CGATCCGGCA TTTCGTAATA TCACTTTTGA CGGGCTGGTG 
GCGGCTTATC GAGAGTCCAC CAAAGCGCTG GTGGAAGGTG GCGCGGATCT GATCCTGATT 
GAAACCGTTT TCGACACCCT TAACGCCAAA GCGGCGGTAT TTGCGGTGAA AACGGAGTTT 
GAAGCGCTGG GCGTTGAGCT GCCGATTATG ATCTCCGGCA CCATCACCGA CGCCTTCGGG 
CGCACGCTCT CCGGGCAGAC CACCGAAGCA TTTTACAACT CATTGCGCCA CGCCGAAGCT 
CTGACCTTTG GCCTGAACTG TGCGCTGGGG CCCGATGAAC TGCGCCAGTA CGTGCAGGAG 
CTGTCACGGA TTGCGGAATG CTACGTCACC GCGCACCCGA ACGCCGGGCT ACCCAACGCC 
TTTGGTGAGT ACGATCTCGA CGCCGACACG ATGGCAAAAC AGATACGTGA ATGGGCGCAA 
GCGGGTTTTC TCAATATCGT CGGCGGCTGC TGTGGCACCA CGCCACAACA TATTGCAGCG 
ATGAGTCGTG CAGTAGAAGG ATTAGCGCCG CGCAAACTGC CGGAAATTCC CGTAGCCTGC 
CGTTTGTCCG GCCTGGAGCC GCTGAACATT GGCGAAGATA GCCTGTTTGT GAACGTGGGT 
GAACGCACCA ACGTCACCGG TTCCGCTAAG TTCAAGCGCC TGATCAAAGA AGAGAAATAC 
AGCGAGGCGC TGGATGTCGC GCGTCAACAG GTGGAAAACG GCGCGCAGAT TATCGATATC 
AACATGGATG AAGGGATGCT CGATGCCGAA GCGGCGATGG TGCGTTTTCT CAATCTGATT 
GCCGGTGAAC CGGATATCGC TCGCGTGCCG ATTATGATCG ACTCCTCAAA ATGGGACGTC 
ATTGAAAAAG GTCTGAAGTG TATCCAGGGC AAAGGCATTG TTAACTCTAT CTCGATGAAA 
GAGGGCGTCG ATGCCTTTAT CCATCACGCG AAATTGTTGC GTCGCTACGG TGCGGCAGTG 
GTGGTAATGG CCTTTGACGA ACAGGGACAG GCCGATACTC GCGCACGGAA AATCGAGATT 
TGCCGTCGGG CGTACAAAAT CCTCACCGAA GAGGTTGGCT TCCCGCCAGA AGATATCATC 
TTCGACCCAA ACATCTTCGC GGTCGCAACT GGCATTGAAG AGCACAACAA CTACGCGCAG 
GACTTTATCG GCGCGTGTGA AGACATCAAA CGCGAACTGC CGCACGCGCT GATTTCCGGC 
GGCGTATCTA ACGTTTCTTT CTCGTTCCGT GGCAACGATC CGGTGCGCGA AGCCATTCAC 
GCAGTGTTCC TCTACTACGC TATTCGCAAT GGCATGGATA TGGGGATCGT CAACGCCGGG 
CAACTGGCGA TTTACGACGA CCTACCCGCT GAACTGCGCG ACGCGGTGGA AGATGTGATT 
CTTAATCGTC GCGACGATGG CACCGAGCGT TTACTGGAGC TTGCCGAGAA ATATCGCGGC 
AGCAAAACCG ACGACACCGC CAACGCCCAG CAGGCGGAGT GGCGCTCGTG GGAAGTGAAT 
AAACGTCTGG AATACTCGCT GGTCAAAGGC ATTACCGAGT TTATCGAGCA GGATACCGAA 
GAAGCCCGCC AGCAGGCTAC GCGCCCGATT GAAGTGATTG AAGGCCCGTT GATGGACGGC 
ATGAATGTGG TCGGCGACCT GTTTGGCGAA GGGAAAATGT TCCTGCCACA GGTGGTCAAA 
TCGGCGCGCG TCATGAAACA GGCGGTGGCC TACCTCGAAC CGTTTATTGA AGCCAGCAAA 
GAGCAGGGCA AAACCAACGG CAAGATGGTG ATCGCCACCG TGAAGGGCGA CGTCCACGAC 
ATCGGTAAAA ATATCGTTGG TGTGGTGCTG CAATGTAACA ACTACGAAAT TGTCGATCTC 
GGCGTTATGG TGCCTGCGGA AAAAATTCTC CGTACCGCTA AAGAAGTGAA TGCTGATCTG 
ATTGGCCTTT CGGGGCTTAT CACGCCGTCG CTGGACGAGA TGGTTAACGT GGCGAAAGAG 
ATGGAGCGTC AGGGCTTCAC TATTCCGTTA CTGATTGGCG GCGCGACGAC CTCAAAAGCG 
CACACGGCGG TGAAAATCGA GCAGAACTAC AGCGGCCCGA CGGTGTATGT GCAGAATGCC 
TCGCGTACCG TTGGTGTGGT GGCGGCGCTG CTTTCCGATA CCCAGCGTGA TGATTTTGTC 
GCTCGTACCC GCAAGGAGTA CGAAACCGTA CGTATTCAGC ACGGGCGCAA GAAACCGCGC 
ACACCACCGG TCACGCTGGA AGCGGCGCGC GATAACGATT TCGCTTTTGA CTGGCAGGCT 
TACACGCCGC CGGTGGCGCA CCGTCTCGGC GTGCAGGAAG TCGAAGCCAG CATCGAAACG 
CTGCGTAATT ACATCGACTG GACACCGTTC TTTATGACCT GGTCGCTGGC CGGGAAGTAT 
CCGCGCATTC TGGAAGATGA AGTGGTGGGC GTTGAGGCGC AGCGGCTGTT TAAAGACGCC 
AACGACATGC TGGATAAATT AAGCGCCGAG AAAACGCTGA ATCCGCGTGG CGTGGTGGGC 
CTGTTCCCGG CAAACCGTGT GGGCGATGAC ATTGAAATCT ACCGTGACGA AACGCGTACC 
CATGTGATCA ACGTCAGCCA CCATCTGCGT CAACAGACCG AAAAAACAGG CTTCGCTAAC 
TACTGTCTCG CTGACTTCGT TGCGCCGAAG CTTTCTGGTA AAGCAGATTA CATCGGCGCA 
TTTGCCGTGA CTGGCGGGCT GGAAGAGGAC GCACTGGCTG ATGCCTTTGA AGCGCAGCAC 
GATGATTACA ACAAAATCAT GGTGAAAGCG CTTGCCGACC GTTTAGCCGA AGCCTTTGCG 
GAGTATCTCC ATGAGCGTGT GCGTAAAGTC TACTGGGGCT ATGCGCCGAA CGAGAACCTC 
AGCAACGAAG AGCTGATCCG CGAAAACTAC CAGGGCATCC GTCCGGCACC GGGCTATCCG 
GCCTGCCCGG AACATACGGA AAAAGCCACC ATCTGGGAGC TGCTGGAAGT GGAAAAACAC 
ACTGGCATGA AACTCACAGA ATCTTTCGCC ATGTGGCCCG GTGCATCGGT TTCGGGTTGG 
TACTTCAGCC ACCCGGACAG CAAGTACTAC GCTGTAGCAC AAATTCAGCG CGATCAGGTT 
GAAGATTATG CCCGCCGTAA AGGTATGAGC GTTACCGAAG TTGAGCGCTG GCTGGCACCG 
AATCTGGGGT ATGACGCGGA CTGA 

 

Protein sequence

MSSKVEQLRA QLNERILVLD GGMGTMIQSY RLNEADFRGE RFADWPCDLK GNNDLLVLSK 
PEVIAAIHNA YFEAGADIIE TNTFNSTTIA MADYQMESLS AEINFAAAKL ARACADEWTA 
RTPEKPRYVA GVLGPTNRTA SISPDVNDPA FRNITFDGLV AAYRESTKAL VEGGADLILI 
ETVFDTLNAK AAVFAVKTEF EALGVELPIM ISGTITDAFG RTLSGQTTEA FYNSLRHAEA 
LTFGLNCALG PDELRQYVQE LSRIAECYVT AHPNAGLPNA FGEYDLDADT MAKQIREWAQ 
AGFLNIVGGC CGTTPQHIAA MSRAVEGLAP RKLPEIPVAC RLSGLEPLNI GEDSLFVNVG 
ERTNVTGSAK FKRLIKEEKY SEALDVARQQ VENGAQIIDI NMDEGMLDAE AAMVRFLNLI 
AGEPDIARVP IMIDSSKWDV IEKGLKCIQG KGIVNSISMK EGVDAFIHHA KLLRRYGAAV 
VVMAFDEQGQ ADTRARKIEI CRRAYKILTE EVGFPPEDII FDPNIFAVAT GIEEHNNYAQ 
DFIGACEDIK RELPHALISG GVSNVSFSFR GNDPVREAIH AVFLYYAIRN GMDMGIVNAG 
QLAIYDDLPA ELRDAVEDVI LNRRDDGTER LLELAEKYRG SKTDDTANAQ QAEWRSWEVN 
KRLEYSLVKG ITEFIEQDTE EARQQATRPI EVIEGPLMDG MNVVGDLFGE GKMFLPQVVK 
SARVMKQAVA YLEPFIEASK EQGKTNGKMV IATVKGDVHD IGKNIVGVVL QCNNYEIVDL 
GVMVPAEKIL RTAKEVNADL IGLSGLITPS LDEMVNVAKE MERQGFTIPL LIGGATTSKA 
HTAVKIEQNY SGPTVYVQNA SRTVGVVAAL LSDTQRDDFV ARTRKEYETV RIQHGRKKPR 
TPPVTLEAAR DNDFAFDWQA YTPPVAHRLG VQEVEASIET LRNYIDWTPF FMTWSLAGKY 
PRILEDEVVG VEAQRLFKDA NDMLDKLSAE KTLNPRGVVG LFPANRVGDD IEIYRDETRT 
HVINVSHHLR QQTEKTGFAN YCLADFVAPK LSGKADYIGA FAVTGGLEED ALADAFEAQH 
DDYNKIMVKA LADRLAEAFA EYLHERVRKV YWGYAPNENL SNEELIRENY QGIRPAPGYP 
ACPEHTEKAT IWELLEVEKH TGMKLTESFA MWPGASVSGW YFSHPDSKYY AVAQIQRDQV 
EDYARRKGMS VTEVERWLAP NLGYDAD