| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_3867 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | + |
|---|
| Start bp | 4162919 |
|---|
| End bp | 4164550 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | signal transduction histidine kinase regulating citrate/malate metabolism |
|---|
| Protein accession | ACX41468 |
|---|
| Protein GI | 260451046 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACATT CATTGCCCTA CCGCATGTTA CGCAAACGTC CGATGAAATT GAGTACCACA
GTGATCTTAA TGATCAGTGC GGTACTGTTC TCGGTGCTAT TGGTGGTGCA TCTGATTTAC
TTCTCGCAAA TCAGTGATAT GACACGAGAT GGGCTAGCCA ACAAGGCACT GGCAGTGGCG
CGTACCCTCG CCGACTCGCC GGAAATCCGT CAGGGCTTGC AGAAAAAACC GCAGGAGAGT
GGCATCCAGG CCATCGCGGA AGCCGTACGC AAACGCAACG ATCTGCTGTT TATTGTCGTT
ACCGATATGC AAAGTCTTCG CTACTCGCAT CCTGAAGCCC AGCGTATTGG TCAGCCATTT
AAAGGTGATG ACATCCTTAA AGCGCTGAAT GGCGAAGAAA ATGTCGCTAT CAATCGCGGT
TTTCTGGCGC AGGCTTTACG CGTATTTACC CCCATCTACG ATGAAAATCA TAAACAAATT
GGCGTGGTGG CGATCGGCCT TGAGTTAAGC CGTGTGACCC AACAGATCAA TGACAGTCGC
TGGAGCATTA TCTGGTCGGT ATTATTTGGC ATGCTGGTCG GACTGATTGG CACCTGCATT
CTGGTTAAGG TACTGAAAAA AATCCTTTTC GGCCTGGAAC CCTACGAAAT CTCCACGCTG
TTTGAGCAAC GCCAGGCCAT GTTGCAGTCT ATCAAAGAAG GCGTCGTTGC CGTGGACGAT
CGCGGCGAGG TCACGCTGAT CAACGATGCC GCACAAGAAT TGCTGAATTA CCGTAAGTCG
CAGGACGATG AGAAACTGTC GACGCTAAGC CACTCATGGT CACAGGTGGT AGATGTCTCG
GAAGTGTTAC GCGACGGTAC CCCGCGCCGC GACGAAGAGA TTACGATTAA AGACCGGCTA
TTACTGATCA ACACCGTTCC GGTGCGCAGT AATGGCGTTA TCATCGGTGC CATTTCAACC
TTCAGGGACA AAACTGAAGT ACGTAAACTG ATGCAGCGAC TCGACGGTCT GGTCAACTAT
GCTGACGCAC TTCGTGAACG ATCCCACGAA TTTATGAATA AATTGCATGT GATTCTCGGA
TTATTGCATC TGAAGAGTTA TAAGCAGTTG GAAGATTACA TTCTCAAAAC AGCCAATAAC
TATCAGGAAG AGATTGGCTC TCTGCTGGGT AAGATCAAAT CTCCGGTTAT CGCTGGTTTT
TTAATCAGCA AGATTAACCG CGCGACCGAT TTAGGCCATA CGCTGATTTT AAACAGTGAA
AGCCAGCTGC CAGACAGCGG CAGTGAGGAC CAGGTCGCGA CGCTGATTAC CACGTTGGGA
AATCTGATAG AAAACGCGCT GGAGGCATTA GGGCCGGAAC CCGGAGGCGA AATTAGCGTA
ACATTGCACT ACCGTCACGG CTGGCTGCAC TGTGAAGTTA ATGATGATGG ACCGGGGATC
GCACCCGATA AAATCGATCA CATTTTTGAC AAAGGTGTCT CGACAAAAGG AAGCGAGCGA
GGCGTCGGTT TAGCACTTGT CAAACAACAG GTAGAAAATC TCGGCGGCAG CATCGCCGTG
GAATCGGAAC CCGGGATTTT CACACAATTT TTTGTCCAGA TACCCTGGGA CGGGGAGAGG
TCGAACAGAT GA
|
|---|
| Protein sequence | MRHSLPYRML RKRPMKLSTT VILMISAVLF SVLLVVHLIY FSQISDMTRD GLANKALAVA
RTLADSPEIR QGLQKKPQES GIQAIAEAVR KRNDLLFIVV TDMQSLRYSH PEAQRIGQPF
KGDDILKALN GEENVAINRG FLAQALRVFT PIYDENHKQI GVVAIGLELS RVTQQINDSR
WSIIWSVLFG MLVGLIGTCI LVKVLKKILF GLEPYEISTL FEQRQAMLQS IKEGVVAVDD
RGEVTLINDA AQELLNYRKS QDDEKLSTLS HSWSQVVDVS EVLRDGTPRR DEEITIKDRL
LLINTVPVRS NGVIIGAIST FRDKTEVRKL MQRLDGLVNY ADALRERSHE FMNKLHVILG
LLHLKSYKQL EDYILKTANN YQEEIGSLLG KIKSPVIAGF LISKINRATD LGHTLILNSE
SQLPDSGSED QVATLITTLG NLIENALEAL GPEPGGEISV TLHYRHGWLH CEVNDDGPGI
APDKIDHIFD KGVSTKGSER GVGLALVKQQ VENLGGSIAV ESEPGIFTQF FVQIPWDGER
SNR
|
|---|
| |