| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_3709 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | + |
|---|
| Start bp | 3997128 |
|---|
| End bp | 3999452 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | ACX41317 |
|---|
| Protein GI | 260450895 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0483354 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCGT TACGCGTTTT TCGTAAAACA ACACCTTTGG TTAACACCAT TCGCCTGAGC
CTGCTGCCGC TGGCCGGTCT CTCGTTTTCC GCTTTTGCTG CACAGGTTAA TATCGCACCG
GGATCGCTCG ATAAAGCGCT CAATCAGTAT GCCGCACACA GCGGATTTAC CCTCTCGGTT
GACGCCAGCC TGACGCGCGG CAAGCAGAGC AACGGCCTGC ACGGCGATTA CGACGTCGAG
AGCGGCCTGC AACAACTGCT GGACGGCAGC GGACTGCAGG TAAAACCGCT GGGAAATAAC
AGCTGGACGC TGGAGCCCGC GCCCGCACCA AAAGAAGATG CCCTGACCGT GGTCGGCGAC
TGGCTGGGTG ATGCGCGTGA AAACGACGTA TTTGAACATG CTGGCGCGCG TGACGTGATC
CGCCGTGAGG ATTTCGCCAA AACCGGCGCA ACCACCATGC GTGAGGTACT TAACCGCATC
CCTGGCGTCA GCGCGCCGGA AAACAACGGC ACCGGCAGCC ACGACCTGGC GATGAACTTT
GGCATCCGGG GCCTGAACCC GCGCCTCGCC AGCCGCTCGA CCGTCCTGAT GGACGGCATC
CCCGTCCCCT TCGCCCCTTA CGGTCAGCCG CAGCTTTCAC TGGCTCCCGT TTCGCTCGGC
AACATGGATG CCATTGACGT GGTACGCGGT GGTGGTGCGG TGCGTTACGG ACCGCAGAGC
GTGGGCGGCG TGGTGAACTT TGTTACCCGT GCCATTCCGC AGGACTTTGG TATCGAGGCG
GGCGTGGAAG GTCAGCTCAG CCCAACCTCT TCACAAAACA ACCCGAAAGA GACGCACAAC
CTGATGGTGG GCGGCACAGC GGACAACGGT TTTGGCACCG CGCTGCTCTA CTCCGGCACG
CGCGGCAGTG ACTGGCGCGA GCACAGCGCC ACCCGCATCG ACGACCTGAT GCTGAAAAGC
AAATATGCGC CGGATGAGGT GCACACCTTC AACAGCCTGC TGCAATATTA CGACGGTGAA
GCCGACATGC CCGGTGGCCT GTCTCGCGCG GATTACGACG CCGATCGCTG GCAATCCACC
CGCCCGTATG ACCGCTTCTG GGGTCGTCGC AAGCTGGCGA GCCTGGGCTA CCAGTTCCAG
CCAGACAGCC AGCATAAATT CAACATTCAG GGGTTCTACA CCCAAACCCT GCGCAGCGGC
TACCTGGAGC AAGGCAAACG CATCACCCTC TCGCCGCGTA ACTACTGGGT GCGCGGTATT
GAGCCACGCT ACAGCCAGAT CTTTATGATC GGCCCTTCCG CGCACGAAGT GGGCGTGGGC
TATCGCTATT TGAATGAATC AACGCATGAA ATGCGTTACT ACACCGCCAC CAGCAGCGGG
CAGTTGCCGT CCGGCTCAAG CCCTTACGAC CGCGATACGC GTTCCGGCAC CGAGGCGCAC
GCCTGGTATC TGGATGACAA AATCGACATC GGCAACTGGA CCATCACGCC GGGTATGCGT
TTCGAACATA TCGAGTCATA CCAGAACAAC GCCATCACAG GCACGCACGA AGAAGTGAGC
TATAACGCAC CGCTTCCGGC GTTGAACGTG CTCTATCACC TGACTGACAG CTGGAATCTT
TATGCAAACA CTGAAGGCTC GTTCGGCACC GTACAGTACA GCCAGATTGG CAAGGCTGTG
CAAAGCGGCA ATGTTGAACC GGAAAAAGCG CGAACCTGGG AACTCGGTAC CCGCTACGAC
GACGGCGCGC TGACGGCGGA AATGGGGCTG TTCCTGATTA ACTTTAACAA TCAGTACGAC
TCCAACCAGA CCAACGACAC CGTCACTGCA CGTGGCAAAA CGCGCCATAC CGGGCTGGAA
ACGCAGGCAC GTTACGATCT GGGTACGCTA ACGCCAACGC TTGATAACGT TTCCATCTAC
GCCAGCTATG CGTATGTGAA CGCGGAAATC CGCGAGAAAG GCGACACCTA CGGCAATCTG
GTACCATTCT CCCCGAAACA TAAAGGCACG CTGGGCGTGG ACTACAAGCC AGGAAACTGG
ACGTTCAATC TGAACAGCGA TTTCCAGTCC AGCCAGTTTG CGGATAACGC CAATACGGTG
AAAGAGAGCG CCGACGGCAG TACCGGCCGC ATTCCCGGCT TCATGCTCTG GGGCGCACGC
GTGGCGTATG ACTTTGGCCC GCAGATGGCA GATCTGAACC TGGCATTCGG TGTGAAAAAC
ATCTTCGACC AGGACTACTT CATCCGCTCT TATGACGACA ACAACAAAGG CATCTATGCA
GGCCAGCCGC GCACGCTGTA TATGCAGGGG TCGTTGAAGT TCTGA
|
|---|
| Protein sequence | MTPLRVFRKT TPLVNTIRLS LLPLAGLSFS AFAAQVNIAP GSLDKALNQY AAHSGFTLSV
DASLTRGKQS NGLHGDYDVE SGLQQLLDGS GLQVKPLGNN SWTLEPAPAP KEDALTVVGD
WLGDARENDV FEHAGARDVI RREDFAKTGA TTMREVLNRI PGVSAPENNG TGSHDLAMNF
GIRGLNPRLA SRSTVLMDGI PVPFAPYGQP QLSLAPVSLG NMDAIDVVRG GGAVRYGPQS
VGGVVNFVTR AIPQDFGIEA GVEGQLSPTS SQNNPKETHN LMVGGTADNG FGTALLYSGT
RGSDWREHSA TRIDDLMLKS KYAPDEVHTF NSLLQYYDGE ADMPGGLSRA DYDADRWQST
RPYDRFWGRR KLASLGYQFQ PDSQHKFNIQ GFYTQTLRSG YLEQGKRITL SPRNYWVRGI
EPRYSQIFMI GPSAHEVGVG YRYLNESTHE MRYYTATSSG QLPSGSSPYD RDTRSGTEAH
AWYLDDKIDI GNWTITPGMR FEHIESYQNN AITGTHEEVS YNAPLPALNV LYHLTDSWNL
YANTEGSFGT VQYSQIGKAV QSGNVEPEKA RTWELGTRYD DGALTAEMGL FLINFNNQYD
SNQTNDTVTA RGKTRHTGLE TQARYDLGTL TPTLDNVSIY ASYAYVNAEI REKGDTYGNL
VPFSPKHKGT LGVDYKPGNW TFNLNSDFQS SQFADNANTV KESADGSTGR IPGFMLWGAR
VAYDFGPQMA DLNLAFGVKN IFDQDYFIRS YDDNNKGIYA GQPRTLYMQG SLKF
|
|---|
| |