| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_3453 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 3704113 |
|---|
| End bp | 3706647 |
|---|
| Gene Length | 2535 bp |
|---|
| Protein Length | 844 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | penicillin-binding protein 1B |
|---|
| Protein accession | ACX41068 |
|---|
| Protein GI | 260450646 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.9649 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGGA ATGACCGCGA GCCAATTGGA CGCAAAGGGA AACCGACGCG TCCGGTCAAA
CAAAAGGTAA GCCGTCGTCG TTACGAAGAT GACGATGATT ACGACGATTA TGATGACTAT
GAGGATGAAG AACCGATGCC GCGCAAAGGT AAGGGCAAAG GCAAAGGGCG TAAGCCTCGT
GGCAAACGCG GCTGGCTATG GCTACTGCTA AAACTGGCTA TCGTTTTTGC CGTGCTGATC
GCCATTTACG GCGTTTATCT CGATCAAAAA ATTCGTAGCC GTATTGATGG CAAGGTCTGG
CAACTGCCTG CGGCAGTTTA TGGCCGAATG GTCAATCTTG AGCCAGACAT GACCATCAGC
AAGAACGAGA TGGTGAAGCT GCTGGAGGCG ACCCAGTATC GTCAGGTGTC GAAAATGACC
CGTCCTGGCG AATTTACCGT GCAGGCCAAC AGCATTGAGA TGATTCGCCG TCCGTTTGAT
TTCCCGGACA GTAAAGAAGG ACAGGTGCGC GCGCGTCTGA CCTTTGATGG CGATCATCTG
GCGACGATCG TCAATATGGA GAACAACCGT CAGTTCGGTT TCTTCCGTCT TGATCCGCGT
CTGATCACCA TGATCTCTTC GCCAAACGGT GAGCAGCGTC TGTTTGTGCC GCGCAGTGGT
TTCCCGGATT TGCTGGTGGA TACTTTGCTG GCGACAGAAG ACCGTCATTT TTACGAGCAT
GATGGAATCA GTCTCTACTC AATCGGACGT GCGGTGCTGG CAAACCTGAC CGCCGGACGC
ACGGTACAGG GTGCGAGTAC GCTGACGCAA CAGCTGGTGA AAAACCTGTT CCTCTCCAGC
GAGCGTTCTT ACTGGCGTAA AGCGAACGAA GCTTACATGG CGCTGATCAT GGACGCGCGT
TACAGCAAAG ACCGTATTCT TGAGCTGTAT ATGAACGAGG TGTATCTCGG TCAGAGCGGC
GACAACGAAA TCCGCGGCTT CCCGCTGGCA AGCTTGTATT ACTTTGGTCG CCCGGTAGAA
GAGCTAAGCC TCGACCAGCA GGCGCTGTTA GTCGGTATGG TGAAAGGGGC GTCCATCTAC
AACCCGTGGC GTAACCCAAA ACTGGCGCTG GAGCGACGTA ATCTGGTGCT GCGTCTGCTG
CAACAGCAAC AGATTATTGA TCAAGAACTC TATGACATGT TGAGTGCCCG TCCGCTGGGG
GTTCAGCCGC GCGGTGGGGT GATCTCTCCT CAGCCAGCCT TTATGCAACT GGTGCGTCAG
GAGCTGCAGG CAAAACTGGG CGATAAGGTA AAAGATCTCT CCGGCGTGAA GATCTTCACT
ACCTTTGACT CGGTGGCCCA GGACGCGGCA GAAAAAGCCG CCGTGGAAGG CATTCCGGCA
CTGAAGAAAC AGCGTAAGTT GAGCGATCTT GAAACTGCGA TTGTGGTCGT CGACCGCTTT
AGTGGTGAAG TTCGTGCGAT GGTCGGAGGT TCTGAGCCGC AGTTTGCGGG CTACAACCGT
GCGATGCAGG CGCGTCGTTC GATTGGTTCC CTTGCAAAAC CAGCGACTTA TCTGACGGCC
TTAAGCCAGC CGAAAATCTA TCGTCTGAAT ACGTGGATTG CGGATGCGCC AATTGCGCTG
CGTCAGCCGA ATGGCCAGGT CTGGTCACCG CAGAATGATG ACCGTCGTTA TAGCGAAAGC
GGCAGAGTGA TGCTGGTGGA TGCGTTGACC CGTTCGATGA ACGTGCCGAC GGTAAATCTG
GGGATGGCGC TGGGGCTGCC TGCGGTTACG GAGACCTGGA TTAAACTGGG CGTACCGAAA
GATCAGTTGC ATCCGGTTCC GGCAATGCTG CTGGGGGCGT TGAACTTAAC GCCAATCGAA
GTGGCGCAGG CATTCCAGAC CATCGCCAGC GGTGGTAACC GTGCACCGCT TTCTGCGCTG
CGTTCGGTAA TCGCGGAAGA TGGCAAAGTG CTGTATCAGA GCTTCCCGCA GGCGGAACGC
GCTGTTCCGG CGCAGGCGGC GTATCTGACA CTATGGACCA TGCAGCAGGT GGTACAACGC
GGTACGGGTC GTCAGCTTGG GGCGAAATAC CCGAACCTGC ATCTGGCAGG GAAAACAGGG
ACTACCAACA ATAACGTAGA TACCTGGTTT GCGGGCATTG ACGGCAGCAC GGTGACCATC
ACCTGGGTCG GCCGTGATAA CAACCAGCCG ACCAAACTGT ATGGTGCCAG CGGGGCAATG
TCGATTTATC AGCGTTATCT GGCTAACCAG ACGCCAACGC CGCTGAATCT TGTTCCGCCA
GAAGATATTG CAGATATGGG CGTGGACTAC GACGGCAACT TTGTTTGCAG CGGTGGCATG
CGTATCTTGC CGGTCTGGAC CAGCGATCCG CAATCGCTGT GCCAGCAGAG CGAGATGCAG
CAGCAGCCGT CAGGCAATCC GTTTGATCAG TCTTCTCAGC CGCAGCAACA GCCGCAACAG
CAACCTGCTC AGCAAGAGCA GAAAGACAGC GACGGTGTAG CCGGTTGGAT CAAGGATATG
TTTGGTAGTA ATTAA
|
|---|
| Protein sequence | MAGNDREPIG RKGKPTRPVK QKVSRRRYED DDDYDDYDDY EDEEPMPRKG KGKGKGRKPR
GKRGWLWLLL KLAIVFAVLI AIYGVYLDQK IRSRIDGKVW QLPAAVYGRM VNLEPDMTIS
KNEMVKLLEA TQYRQVSKMT RPGEFTVQAN SIEMIRRPFD FPDSKEGQVR ARLTFDGDHL
ATIVNMENNR QFGFFRLDPR LITMISSPNG EQRLFVPRSG FPDLLVDTLL ATEDRHFYEH
DGISLYSIGR AVLANLTAGR TVQGASTLTQ QLVKNLFLSS ERSYWRKANE AYMALIMDAR
YSKDRILELY MNEVYLGQSG DNEIRGFPLA SLYYFGRPVE ELSLDQQALL VGMVKGASIY
NPWRNPKLAL ERRNLVLRLL QQQQIIDQEL YDMLSARPLG VQPRGGVISP QPAFMQLVRQ
ELQAKLGDKV KDLSGVKIFT TFDSVAQDAA EKAAVEGIPA LKKQRKLSDL ETAIVVVDRF
SGEVRAMVGG SEPQFAGYNR AMQARRSIGS LAKPATYLTA LSQPKIYRLN TWIADAPIAL
RQPNGQVWSP QNDDRRYSES GRVMLVDALT RSMNVPTVNL GMALGLPAVT ETWIKLGVPK
DQLHPVPAML LGALNLTPIE VAQAFQTIAS GGNRAPLSAL RSVIAEDGKV LYQSFPQAER
AVPAQAAYLT LWTMQQVVQR GTGRQLGAKY PNLHLAGKTG TTNNNVDTWF AGIDGSTVTI
TWVGRDNNQP TKLYGASGAM SIYQRYLANQ TPTPLNLVPP EDIADMGVDY DGNFVCSGGM
RILPVWTSDP QSLCQQSEMQ QQPSGNPFDQ SSQPQQQPQQ QPAQQEQKDS DGVAGWIKDM
FGSN
|
|---|
| |