| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_2936 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 3147343 |
|---|
| End bp | 3151536 |
|---|
| Gene Length | 4194 bp |
|---|
| Protein Length | 1397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | YD repeat protein |
|---|
| Protein accession | ACX40567 |
|---|
| Protein GI | 260450145 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAA AACCGGCGGC GCGTCAGGGC GACATGACGC AGTATGGCGG TAGCATTGTC
CAGGGTTCAG CCGGGGTACG CATCGGTGCC CCCACCGGCG TGGCCTGTTC GGTGTGCCCC
GGCGGGGTGA CGTCCGGCCA TCCGGTCAAT CCGCTGCTCG GTGCAAAGGT CCTTCCCGGT
GAAACCGACA TCGCCCTGCC CGGCCCGCTG CCGTTCATTC TCTCCCGCAC CTACAGCAGT
TACCGGACAA AAACGCCCGC GCCGGTGGGG AGCCTCGGCC CCGGCTGGAA AATGCCTGCG
GATATCCGCT TACAGCTGCG CGATAACACA CTGATACTCA GTGATAACGG CGGCAGAAGC
CTGTATTTTG AGCACCTGTT TCCCGGTGAG GACGGTTACA GCCGCAGCGA GTCACTGTGG
CTGGTGCGCG GCGGCGTGGC GAAACTGGAT GAAGGTCACC GGCTGGCCGC ACTCTGGCAG
GCGCTGCCGG AAGAACTCCG CTTAAGTCCG CATCGTTATC TGGCGACAAA CAGTCCGCAG
GGGCCGTGGT GGCTGCTCGG CTGGTGTGAG CGGGTGCCGG AAGCGGATGA GGTGCTGCCT
GCGCCGCTGC CGCCGTACCG GGTACTGACC GGGCTGGTGG ACCGCTTCGG GCGCACACAG
ACGTTCCACC GCGAAGCCGC CGGTGAATTC AGCGGCGAAA TCACCGGCGT GACGGATGGT
GCCGGGCGTC ACTTCCGGCT GGTACTGACC ACGCAGGCGC AGCGGGCAGA AGAAGCCCGG
CAGCAGGCCA TTTCCGGCGG GACGGAACCG TCCGCTTTTC CTGATACCCT GCCGGGTTAC
ACCGAATATG GCCGGGACAA CGGCATCCGT CTGTCTGCCG TGTGGCTGAC GCACGACCCG
GAATACCCGG AGAATTTACC TGCCGCGCCG CTGGTGCGCT ATGGCTGGAC GCCCCGCGGC
GAACTGGCGG CGGTGTATGA CCGCAGCAAT ACACAGGTGC GCAGCTTTAC TTACGATGAT
AAATACCGGG GCCGGATGGT GGCGCACCGT CACACGGGCC GACCGGAAAT CTGTTACCGT
TACGACAGCG ACGGGCGGGT GACAGAACAG CTAAACCCGG CAGGCTTAAG TTACACGTAT
CAGTATGAGA AGGACCGCAT CACCATCACC GACAGCCTGA ACCGCCGTGA AGTCCTGCAC
ACGCAGGGTG AAGGCGGGCT GAAGCGGGTG GTGAAAAAGG AACACGCGGA CGGCAGCGTC
ACGCAGAGTC AGTTTGACGC GGTGGGCAGG CTCAGGGCAC AGACGGATGC CGCAGGCAGG
ACAACAGAAT ACAGTCCGGA TGTGGTGACG GGCCTCATCA CGCGCATCAC CACGCCGGAT
GGCAGGGCAT CGGCGTTTTA CTATAACCAC CACAGCCAGT TAACGTCAGC CACCGGGCCT
GACGGGCTGG AAATACGCCG GGAATATGAT GAATGGGGCC GTCTGATTCA GGAAACTGCC
CCTGACGGCG ATATCACCCG CTACCGTTAT GATAATCCAC ACAGTGACTT ACCCTGCGCA
ACGGAAGATG CCACCGGCAG CCGGAAAACC ATGACGTGGA GCCGTTACGG TCAGTTGCTG
AGCTTCACTG ACTGTTCCGG TTATGTAACC CGCTATGACC ATGACCGTTT TGGTCAGGTG
ACGGCGGTGC ACCGCGAGGA AGGGCTGAGT CAGTACCGCG CATACGACAG CCGTGGACAG
TTAATTGCCG TGAAAGACAC GCAGGGCCAT GAAACGCGGT ATGAATACAA CGCCGCCGGT
GACCTGACCA CCGTCATTGC CCCGGACGGC AGCAGAAACG GGACACAGTA CGATGCGTGG
GGAAAAGCCA TCTGTACCAC GCAGGGCGGT CTGACGCGCA GTATGGAATA CGATGCTGCC
GGACGGGTCA TCCGCCTGAC CAGTGAAAAC GGCAGCCACA CCACCTTCCG TTACGATGTA
CTCGACCGGC TGATACAGGA AACCGGCTTT GACGGCCGCA CACAGCGTTA TCACCACGAC
CTGACCGGCA AACTTATCCG CAGCGAGGAT GAGGGGCTGG TCACCCACTG GCACTATGAC
GAAGCAGACC GCCTCACGCA CCGCACCGTG AATGGCGAAA CCGCAGAGCG GTGGCAGTAT
GACGAACGCG GCTGGCTGAC AGACATCAGC CATATCAGCG AAGGGCACCG GGTGACGGTG
CACTATGGTT ATGACAGTAA AGGCCGCCTC GCCAGTGAAC ACCTGACGGT GCATCATCCG
CAGACGAATG AACTGCTCTG GCAGCATGAG ACCAGACATG CGTACAACGC ACAGGGACTG
GCGAACCGCT GTATACCGGA CAGCCTGCCC GCCGTGGAAT GGCTGACCTA CGGCAGCGGC
TGGCTGTCAG GCATGAAACT CGGCGACACA CCGCTGGTGG AGTACACCCG CGACCGCCTG
CACCGGGAAA CGCTGCGCAG CTTCGGCCGT TATGAACTCA CCACCGCTTA TACCCCTGCC
GGGCAGTTAC AGAGCCAGCA CCTGAACAGC CTGCTGTCTG ACCGCGATTA CACCTGGAAC
GACAACGGCG AACTCATCCG CATCAGCAGC CCGCGCCAGA CCCGGAGTTA CAGCTACAGC
ACCACCGGCA GGCTGACCGG CGTTCACACC ACCGCAGCGA ATCTGGATAT CCGCATCCCG
TATACCACAG ACCCGGCAGG TAACCGCCTG CCCGACCCGG AGCTGCACCC GGACAGCGCC
CTCAGCATGT GGCCGGATAA CCGTATCGCC CGTGACGCGC ACTATCTTTA CCGGTATGAC
CGTCACGGCA GGCTGACAGA GAAAACCGAC CTCATCCCGG AAGGGGTTAT CCGCACGGAT
GATGAGCGCA CCCACCGGTA CCATTACGAC AGTCAGCACC GGCTGGTGCA CTACACGCGG
ACACAATATG CAGAGCCGCT GGTCGAAAGT CGCTATCTTT ACGACCCGCT GGGCCGCAGG
GTGGCAAAAC GGGTATGGCG GCGTGAACGG GACCTGACGG GCTGGATGTC GCTGTCACGG
AAACCGCAAG TGACCTGGTA CGGCTGGGAC GGCGACCGCC TGACCACGAT ACAGAACGAC
AGAACCCGCA TCCAGACGAT TTATCAGCCG GGGAGCTTCA CGCCACTCAT CAGGGTTGAA
ACCGCCACCG GTGAGCTGGC GAAAACGCAG CGCCGCAGCC TGGCGGATAC CCTTCAGCAG
TCCGGTGGCG AAGACGGTGG CAGTGTGGTG TTCCCGCCGG TGCTGGTGCA GATGCTCGAC
CGGCTGGAAA GTGAAATCCT GGCTGACCGG GTGAGTGAGG AAAGCCGCCG CTGGCTGGCA
TCGTGCGGCC TGACGGTGGC GCAGATGCAA AGCCAGATGG ACCCGGTATA CACGCCGGCG
CGAAAAATTC ACCTGTACCA CTGCGACCAT CGCGGCCTGC CGCTGGCCCT TATCAGCACG
GAAGGGACAA CAGCGTGGTA CGCAGAATAC GATGAATGGG GTAACCTGCT GAATGAAGAG
AACCCGCATC AGCTGCAGCA GCTTATCCGC CTGCCGGGGC AGCAGTATGA TGAGGAGTCC
GGCCTGTATT ACAACCGCCA CCGCTATTAT GACCCGCTGC AGGGGCGATA TATCACTCAG
GATCCGATTG GGCTGAAAGG GGGATGGAAT TTTTATCAGT ATCCGTTGAA TCCGATCTCA
AATATAGATC CATTAGGATT AGAAACACTA AAATGCATTA AGCCACTGCA TTCAATGGGC
GGAACTGGTG AAAGAAGCGG TCCAGATATA TGGGGGAATC CGTTCTATCA TCAATATCTT
TGTGTCCCAG ATGGTAAAGG GGACTATACT TGTGGTGGCC AAGACCAACG GGGAGAATCA
AAAGGAGATG GTCTATGGGG GCCAGGTAAA GCAAGTAATG ATACAAAAGA AGCTGCTGGC
CGTTGTGACC TCGTTGAAAC CGATAATAGT TGTGTGGAGA ACTGTTTAAA AGGGAAGTTT
AAAGAGGTAA GGCCGCGTTA TTCTGTATTG CCTGATATAT TCACACCTAT AAATTTAGGG
CTATTTAAAA ACTGCCAAGA CTGGTCTAAT GATTCTTTAG AAACATGTAA GATGAAGTGC
TCCGGAAATA ACATTGGACG TTTTATTAGA TTTGTATTCA CCGGAGTGAT GTAA
|
|---|
| Protein sequence | MSGKPAARQG DMTQYGGSIV QGSAGVRIGA PTGVACSVCP GGVTSGHPVN PLLGAKVLPG
ETDIALPGPL PFILSRTYSS YRTKTPAPVG SLGPGWKMPA DIRLQLRDNT LILSDNGGRS
LYFEHLFPGE DGYSRSESLW LVRGGVAKLD EGHRLAALWQ ALPEELRLSP HRYLATNSPQ
GPWWLLGWCE RVPEADEVLP APLPPYRVLT GLVDRFGRTQ TFHREAAGEF SGEITGVTDG
AGRHFRLVLT TQAQRAEEAR QQAISGGTEP SAFPDTLPGY TEYGRDNGIR LSAVWLTHDP
EYPENLPAAP LVRYGWTPRG ELAAVYDRSN TQVRSFTYDD KYRGRMVAHR HTGRPEICYR
YDSDGRVTEQ LNPAGLSYTY QYEKDRITIT DSLNRREVLH TQGEGGLKRV VKKEHADGSV
TQSQFDAVGR LRAQTDAAGR TTEYSPDVVT GLITRITTPD GRASAFYYNH HSQLTSATGP
DGLEIRREYD EWGRLIQETA PDGDITRYRY DNPHSDLPCA TEDATGSRKT MTWSRYGQLL
SFTDCSGYVT RYDHDRFGQV TAVHREEGLS QYRAYDSRGQ LIAVKDTQGH ETRYEYNAAG
DLTTVIAPDG SRNGTQYDAW GKAICTTQGG LTRSMEYDAA GRVIRLTSEN GSHTTFRYDV
LDRLIQETGF DGRTQRYHHD LTGKLIRSED EGLVTHWHYD EADRLTHRTV NGETAERWQY
DERGWLTDIS HISEGHRVTV HYGYDSKGRL ASEHLTVHHP QTNELLWQHE TRHAYNAQGL
ANRCIPDSLP AVEWLTYGSG WLSGMKLGDT PLVEYTRDRL HRETLRSFGR YELTTAYTPA
GQLQSQHLNS LLSDRDYTWN DNGELIRISS PRQTRSYSYS TTGRLTGVHT TAANLDIRIP
YTTDPAGNRL PDPELHPDSA LSMWPDNRIA RDAHYLYRYD RHGRLTEKTD LIPEGVIRTD
DERTHRYHYD SQHRLVHYTR TQYAEPLVES RYLYDPLGRR VAKRVWRRER DLTGWMSLSR
KPQVTWYGWD GDRLTTIQND RTRIQTIYQP GSFTPLIRVE TATGELAKTQ RRSLADTLQQ
SGGEDGGSVV FPPVLVQMLD RLESEILADR VSEESRRWLA SCGLTVAQMQ SQMDPVYTPA
RKIHLYHCDH RGLPLALIST EGTTAWYAEY DEWGNLLNEE NPHQLQQLIR LPGQQYDEES
GLYYNRHRYY DPLQGRYITQ DPIGLKGGWN FYQYPLNPIS NIDPLGLETL KCIKPLHSMG
GTGERSGPDI WGNPFYHQYL CVPDGKGDYT CGGQDQRGES KGDGLWGPGK ASNDTKEAAG
RCDLVETDNS CVENCLKGKF KEVRPRYSVL PDIFTPINLG LFKNCQDWSN DSLETCKMKC
SGNNIGRFIR FVFTGVM
|
|---|
| |