| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_2468 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 2649740 |
|---|
| End bp | 2650399 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase |
|---|
| Protein accession | ACX40108 |
|---|
| Protein GI | 260449686 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0015022 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCAAC ATCACAACTG GCAAGGTGCG CTGCTGGATT ATCCGGTGAG TAAAGTAGTC
TGTGTTGGCA GTAACTATGC CAAACATATT AAAGAGATGG GCAGCGCAGT GCCCGAAGAG
CCAGTGCTGT TTATTAAACC AGAAACGGCA CTGTGCGATC TGCGGCAGCC ATTGGCGATC
CCATCCGATT TCGGTTCAGT TCATCATGAA GTCGAACTGG CGGTGTTGAT TGGCGCGACA
CTGCGTCAGG CTACGGAAGA GCATGTCCGC AAAGCCATTG CCGGTTATGG CGTGGCGCTC
GATCTGACAT TGCGTGATGT TCAGGGAAAA ATGAAGAAAG CCGGGCAGCC GTGGGAAAAG
GCTAAAGCGT TTGATAACTC TTGTCCGCTT TCCGGGTTTA TTCCCGCGGC GGAATTTACC
GGCGACCCGC AAAATACAAC GCTGAGCCTG AGCGTAAACG GCGAACAACG CCAGCAAGGT
ACGACTGCGG ACATGATCCA TAAAATCGTT CCGCTGATCG CTTATATGAG CAAGTTTTTT
ACCCTCAAGG CCGGTGACGT TGTGTTGACA GGCACGCCTG ATGGCGTCGG CCCGTTGCAA
AGCGGTGATG AGCTGACAGT CACTTTCGAT GGGCATTCTT TGACAACTCG CGTTTTGTAA
|
|---|
| Protein sequence | MYQHHNWQGA LLDYPVSKVV CVGSNYAKHI KEMGSAVPEE PVLFIKPETA LCDLRQPLAI
PSDFGSVHHE VELAVLIGAT LRQATEEHVR KAIAGYGVAL DLTLRDVQGK MKKAGQPWEK
AKAFDNSCPL SGFIPAAEFT GDPQNTTLSL SVNGEQRQQG TTADMIHKIV PLIAYMSKFF
TLKAGDVVLT GTPDGVGPLQ SGDELTVTFD GHSLTTRVL
|
|---|
| |