Gene EcDH1_0505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcDH1_0505 
Symbol 
ID
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli DH1 
KingdomBacteria 
Replicon accessionCP001637 
Strand
Start bp537614 
End bp539047 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content53% 
IMG OID 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionACX38193 
Protein GI260447771 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAG GTTTGCAACT CAGGCTTAGC CAACAACTGG CGATGACGCC ACAGCTCCAA 
CAGGCAATTC GTCTGTTGCA GTTGTCGACG CTGGAACTTC AGCAGGAGCT ACAGCAGGCG
CTGGAGAGTA ATCCGCTGCT TGAGCAAATC GACACTCATG AAGAAATCGA CACCCGCGAA
ACGCAAGACA GTGAAACGCT GGACACCGCC GACGCGCTCG AACAAAAAGA GATGCCGGAA
GAGCTGCCGC TCGATGCCAG TTGGGACACC ATTTACACCG CTGGTACACC ATCCGGCACC
AGCGGTGACT ACATTGACGA CGAGCTGCCG GTCTACCAGG GCGAAACGAC GCAGACCTTG
CAGGATTACC TGATGTGGCA GGTTGAGCTG ACACCGTTTT CCGACACTGA CCGCGCTATT
GCTACCTCTA TCGTCGATGC CGTTGATGAA ACCGGTTATC TGACTGTCCC GCTGGAAGAT
ATTCTCGAAA GTATAGGCGA TGAAGAGATC GACATCGACG AAGTTGAAGC CGTCCTTAAG
CGGATCCAAC GGTTTGATCC GGTCGGTGTG GCGGCAAAAG ATCTGCGTGA CTGTCTGCTG
ATCCAACTCT CCCAATTCGA TAAGACCACG CCGTGGCTGG AAGAGGCCAG ACTGATCATT
AGCGATCATC TCGATCTGTT AGCCAATCAC GACTTCCGCA CTTTAATGCG CGTCACGCGT
CTGAAAGAAG ATGTGCTGAA AGAAGCCGTC AATCTGATCC AGTCGCTCGA TCCGCGCCCC
GGGCAGTCGA TCCAGACTGG CGAACCTGAG TATGTCATTC CAGATGTGCT GGTGCGTAAG
CATAACGGTC ACTGGACGGT AGAACTCAAC AGTGACAGCA TTCCGCGTCT GCAAATCAAC
CAGCACTACG CCTCGATGTG CAATAACGCG CGCAACGATG GTGACAGCCA GTTTATCCGC
AGCAATCTGC AGGATGCCAA ATGGTTGATC AAGAGTCTGG AAAGCCGTAA CGATACGCTA
CTGCGCGTGA GTCGCTGTAT CGTTGAACAG CAGCAAGCCT TCTTTGAGCA AGGTGAAGAA
TATATGAAAC CGATGGTACT GGCCGATATC GCCCAGGCTG TCGAAATGCA TGAATCGACG
ATATCTCGCG TGACCACGCA AAAATACCTG CATAGTCCAC GAGGCATTTT TGAACTGAAG
TATTTCTTTT CCAGTCACGT CAATACCGAG GGCGGCGGCG AAGCTTCCTC CACGGCGATT
CGTGCGCTGG TGAAGAAATT AATCGCGGCG GAAAACCCAG CGAAACCGTT GAGCGACAGC
AAGTTAACCT CTTTGCTGTC GGAACAAGGT ATCATGGTGG CACGCCGCAC TGTTGCGAAG
TACCGAGAGT CTTTATCCAT TCCGCCGTCA AACCAGCGTA AACAACTCGT TTGA
 
Protein sequence
MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQELQQA LESNPLLEQI DTHEEIDTRE 
TQDSETLDTA DALEQKEMPE ELPLDASWDT IYTAGTPSGT SGDYIDDELP VYQGETTQTL
QDYLMWQVEL TPFSDTDRAI ATSIVDAVDE TGYLTVPLED ILESIGDEEI DIDEVEAVLK
RIQRFDPVGV AAKDLRDCLL IQLSQFDKTT PWLEEARLII SDHLDLLANH DFRTLMRVTR
LKEDVLKEAV NLIQSLDPRP GQSIQTGEPE YVIPDVLVRK HNGHWTVELN SDSIPRLQIN
QHYASMCNNA RNDGDSQFIR SNLQDAKWLI KSLESRNDTL LRVSRCIVEQ QQAFFEQGEE
YMKPMVLADI AQAVEMHEST ISRVTTQKYL HSPRGIFELK YFFSSHVNTE GGGEASSTAI
RALVKKLIAA ENPAKPLSDS KLTSLLSEQG IMVARRTVAK YRESLSIPPS NQRKQLV