| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_0491 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 518576 |
|---|
| End bp | 520957 |
|---|
| Gene Length | 2382 bp |
|---|
| Protein Length | 793 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | ACX38179 |
|---|
| Protein GI | 260447757 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAA AAACGTTACT GGCCTACACC ATTGGTTTTG CCTTTTCTCC CCCAGCCAAT
GCAGATGGTA TAGAGATTGC CGCTGTTGAT TTTGATCGGG AAACATTAAA ATCACTAGGT
GTAGATCCTA ATATATCGCA TTATTTTTCC CGTTCAGCCC GTTTTTTGCC AGGTGAATAT
TCACTGATAG TATCAGTAAA TGGCGAAAAA AAAGGCAACA TTGCTACGCG CTTTGATGAA
AATGGCGACA TTTGTCTTGA TCAGGCATTT CTGCAACAAG CCGGTTTAAA AATTCCTTCT
GAAGAAAAAA ATGGCTGTTA CGACTATATA TTGTCCTACC CGGGTACCAC AATCACACCA
TTACCTAACC AGGAAGCGTT AGATATTATC GTTTCACCAC AGGCGATCAT TCCCATAGGG
TTGGATCTCA CAAACGCAGC AACTGGTGGA ACAGCTGCGC TGCTAAACTA CTCTCTGATG
AGCAGCCGTG CAGAATTTTC TAATGGGAGT TCGGACTACT CCCAGGCTGC ACTTGAAGGC
GGGATTAATA TTAATGACTG GATGTTACGC AGCCATCAGT TCCTTACACA AACAAATGGC
ACATTCAGTA ACCAGAACTC GTCAACCTAC CTTCAACGTA CCTTTACAGA TCTTAAAACA
CTCATGCGAG CAGGTGAAGT TAACCTCAAT AATAGCGTGT TGGAAGGAGC CAGTATTTAC
GGTATCGAAA TCGCACCGGA CAACGCATTG CAAACCAGCG GCAGTGGTGT GCAAGTTACT
GGTATAGCCA ACACCTCTCA GGCTCGTGTC GAGATTCGTC AACAAGGAGT TTTAATTCAT
TCCATTCTGG TTCCTGCGGG CGCATTCACT ATCCCTGATG TACCTGTTCG CAATGGTAAT
AGTGATCTTA ATGTCACCGT TGTCGAAACA GACGGTAGTT CGCACAACTA TATTGTTCCC
TCCACCCTGT TTAATCAGCA TGTAGAAAGC TTCCAGGGTT ATCGCTTCGC GATAGGGCGG
GTAGACGATG ACTATGACGA ATCACCTTGG GTAATTAGTG CATCGAGCGG ATGGAATCTG
ACACGCTGGA GTGCAATGAA CGGCGGCGTT ATCGTAGCAG AAAATTATCA GGCGGCATCA
ATCCGGTCGA GTCTGGTTCC CCTGCCCGAT TTAACAGTGA GCAGCCAAAT TAGTACATCG
CAGGATACGA AAGACTCACT GCAAGGACAG AAATATCGTC TTGACGCGAA CTACAATCTC
CCATTTTCAC TTGGGCTAAC AACCAGCCTC ACTCGATCTG ATCGCCATTA TCGCGAACTG
TCTGAAGCGA TTGATGATGA TTATACCGAT CCGACTAAAA GCACTTATGC GCTTGGTTTA
AACTGGTCTA ACTCCATTCT GGGTGGTTTC AACATCAGTG GCTATAAAAC ATATAGTTAC
GACGGTGACA ATGACTCAAG CAACCTTAAT ATTAACTGGA ACAAAGCGTT CAAACACGCC
ACGGTTTCCG TCAACTGGCA GCATCAACTT AGTGCTTCAG AAAATAATGA AGACGATGGT
GATCTGTTCT ACGTCAACAT CAGTATTCCA TTTGGCAGAT CAAACACCGC CACACTGTAT
ACTCGCCATG ACGATCATAA AACCCACTAT GGTACTGGTG TCATGGGAGT CGTCTCAGAT
GAGATGTCCT ACTATGTGAA TGCTGAACGA GATCACGACG AACGTGAAAC GAGCTTGAAC
GGCAGTATCA GTTCCAATCT CCATTACACC CAAGTCAGCC TTGCCGCAGG AGCAAGCGGC
AGTGATAGCC GTACTTACAA CGGTACGATG TCAGGTGGTA TTGCCGTACA TGATCAGGGA
GTGACCTTTT CACCGTGGAC TATCAATGAC ACTTTCGCCA TCGCAAAAAT GGATAACAAT
ATTGCAGGTG TCAGAATTAC ATCTCAGGCA GGCCCAGTAT GGACAGATTT TCGGGGTAAT
GCCGTCATTC CATCAATCCA GCCGTGGCGA ACATCAGGAG TTGAGATCGA TACCGCCAGC
TTGCCAAAAA ATGTCGATAT CGGTAACGGC ACAAAAATGA TCAAACAAGG CCGTGGTGCA
GTAGGGAAAG TCGGATTCAG TGCGATAACA CAACGCCGTG CATTACTCAA TATCACACTT
TCCGACGGCA AAAAACTGCC CAGAGGCGTT GCGATTGAAG ATAGTGAAGG CAACTATCTG
ACAACATCAG TGGATGACGG TGTTGTATTC CTCAATAACA TCAAACCGGA CATGGTGCTA
GATATAAAAG ATGAGCAGCA ATCATGCCGT ATTCACCTTA CATTCCCAGA AGATGCACCA
AAAGATGTGT TCTATGAGAC AGCAACAGGA GAGTGCCAAT GA
|
|---|
| Protein sequence | MLKKTLLAYT IGFAFSPPAN ADGIEIAAVD FDRETLKSLG VDPNISHYFS RSARFLPGEY
SLIVSVNGEK KGNIATRFDE NGDICLDQAF LQQAGLKIPS EEKNGCYDYI LSYPGTTITP
LPNQEALDII VSPQAIIPIG LDLTNAATGG TAALLNYSLM SSRAEFSNGS SDYSQAALEG
GININDWMLR SHQFLTQTNG TFSNQNSSTY LQRTFTDLKT LMRAGEVNLN NSVLEGASIY
GIEIAPDNAL QTSGSGVQVT GIANTSQARV EIRQQGVLIH SILVPAGAFT IPDVPVRNGN
SDLNVTVVET DGSSHNYIVP STLFNQHVES FQGYRFAIGR VDDDYDESPW VISASSGWNL
TRWSAMNGGV IVAENYQAAS IRSSLVPLPD LTVSSQISTS QDTKDSLQGQ KYRLDANYNL
PFSLGLTTSL TRSDRHYREL SEAIDDDYTD PTKSTYALGL NWSNSILGGF NISGYKTYSY
DGDNDSSNLN INWNKAFKHA TVSVNWQHQL SASENNEDDG DLFYVNISIP FGRSNTATLY
TRHDDHKTHY GTGVMGVVSD EMSYYVNAER DHDERETSLN GSISSNLHYT QVSLAAGASG
SDSRTYNGTM SGGIAVHDQG VTFSPWTIND TFAIAKMDNN IAGVRITSQA GPVWTDFRGN
AVIPSIQPWR TSGVEIDTAS LPKNVDIGNG TKMIKQGRGA VGKVGFSAIT QRRALLNITL
SDGKKLPRGV AIEDSEGNYL TTSVDDGVVF LNNIKPDMVL DIKDEQQSCR IHLTFPEDAP
KDVFYETATG ECQ
|
|---|
| |