Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcDH1_0273 |
Symbol | |
ID | 0 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli DH1 |
Kingdom | Bacteria |
Replicon accession | CP001637 |
Strand | - |
Start bp | 300722 |
End bp | 301900 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | |
Product | type VI secretion system effector, Hcp1 family |
Protein accession | ACX37963 |
Protein GI | 260447541 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 56 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATA TTGTTTACCT GACAGTAACG GGAGAACAAC AAGGAAGCAT CTCCGCAGGT TGTGGGACTT CTGAGTCTAC AGGTAATCGT TGGCAGAGCG GGCATGAGGA TGAAATATTT ACATTCTCAC TCTTAAATAA TATTAATAAT ACGGGGCTTG GTTCACAGTT CCATGGTATA ACATTTTGTA AATTAATTGA TAAAAGCACT CCATTATTTA TTAATTCCAT TAACAATAAT GAACAATTAT TTATGGGATT TGACTTCTAT CGAATAAATA GATTTGGTAG ATTGGAAAAG TATTATTATA TACAACTAAG AGGCGCTTTT TTATCGGCTA TTCATCACCA GATCATTGAA AACCAACTGG ATACAGAAAC AATAACTATT AGTTATGAAT TTATCCTCTG TCAACATCTT ATCGCAAATA CCGAGTTCAG CTATTTGGCA CTCCCTGAAA ATTATAACCG TTTGTTTTTA CCAAATTCAA AAAACCAAAC AAATAATCGT TTCAAAACGT TAAACAGCAA AGCTATTGGC AGGCTACTTG CTGCTGGTGG CGTATACAAT GGGAACATTG AAGGATTCAG AGATACTGCG GAAAAACTGG GTGGAGATGC AATAAAAGGC TATGATCAAA TACTAAATGA AAAAACAGCG GGCATAGCGA TAGCAACAGC ATCTATTCTT TTAACAAAGC GTTCTAATGT TGATACATAT ACAGAAATAA ATAGTTACTT AGGCAAACTT AGAGGTCAAC AAAAACTTCT TGATGGTATA GACATAATAG AAATAATATA CATTAAGAGA CCTTCAAAAG ACTTAGCTAA CTTACGAAAG GAGTTTAATA AAACTGTAAG AAAAAATTTT CTTATCAAAC TTGCAAAAAC CTCCGAAGCA TCTGGAAGAT TCAACGCCGA AGACCTTTTA AGAATGAGAA AGGGCAATGT TCCTCTAAAT TATAATGTTC ACCATAAACT ATCTCTAGAT GATGGTGGTA CTAATGATTT CGAAAATTTA GTATTAATCG AAAACGAACC ATATCATAAA GTTTTTACTA ACATGCAATC ACGAATAGCT AAGGGAATAT TAGTAGGTGA AAGCAAAATC ACTCCCTGGG CCATTCCATC TGGCTCAATT TATCCTCCCA TGAAAAATAT TATGGACCAC ACAAAATGA
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Protein sequence | MSNIVYLTVT GEQQGSISAG CGTSESTGNR WQSGHEDEIF TFSLLNNINN TGLGSQFHGI TFCKLIDKST PLFINSINNN EQLFMGFDFY RINRFGRLEK YYYIQLRGAF LSAIHHQIIE NQLDTETITI SYEFILCQHL IANTEFSYLA LPENYNRLFL PNSKNQTNNR FKTLNSKAIG RLLAAGGVYN GNIEGFRDTA EKLGGDAIKG YDQILNEKTA GIAIATASIL LTKRSNVDTY TEINSYLGKL RGQQKLLDGI DIIEIIYIKR PSKDLANLRK EFNKTVRKNF LIKLAKTSEA SGRFNAEDLL RMRKGNVPLN YNVHHKLSLD DGGTNDFENL VLIENEPYHK VFTNMQSRIA KGILVGESKI TPWAIPSGSI YPPMKNIMDH TK
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