Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECD_04046 |
Symbol | rnr |
ID | 0 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli BL21(DE3) |
Kingdom | Bacteria |
Replicon accession | CP001509 |
Strand | + |
Start bp | 4313174 |
End bp | 4315615 |
Gene Length | 2442 bp |
Protein Length | 813 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | exoribonuclease R, RNase R |
Protein accession | ACT45835 |
Protein GI | 253980165 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.765624 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCACAAG ATCCTTTCCA GGAACGCGAA GCTGAAAAAT ACGCGAATCC CATCCCTAGT CGGGAATTTA TCCTCGAACA TTTAACCAAA CGTGAAAAAC CGGCCAGCCG TGATGAGCTG GCGGTAGAAC TGCACATTGA AGGCGAAGAG CAGCTTGAAG GCCTGCGTCG CCGCCTGCGC GCGATGGAGC GCGATGGTCA ACTGGTCTTC ACTCGTCGTC AGTGCTATGC GCTGCCGGAA CGCCTCGACC TGGTGAAAGG TACCGTTATT GGCCACCGTG ATGGCTACGG CTTTCTGCGG GTTGAAGGGC GTAAAGATGA TTTGTATCTC TCCAGCGAGC AGATGAAAAC CTGCATTCAT GGCGATCAGG TGCTGGCGCA GCCGCTGGGC GCTGACCGTA AAGGTCGTCG TGAAGCGCGT ATTGTCCGCG TACTGGTGCC AAAAACCAGC CAGATTGTTG GTCGCTACTT TACTGAAGCG GGCGTCGGCT TTGTGGTTCC TGACGATAGC CGTCTGAGCT TCGATATCTT AATCCCGCCC GATCAGATCA TGGGCGCGAG GATGGGCTTT GTGGTCGTAG TCGAACTGAC TCAGCGTCCG ACTCGCCGCA CCAAAGCGGT GGGTAAAATC GTCGAAGTGC TGGGCGACAA TATGGGCACC GGCATGGCGG TTGATATCGC TCTGCGTACC CATGAAATTC CGTACATCTG GCCGCAGGCT GTTGAGCAAC AGGTTGCCGG GCTGAAAGAA GAAGTGCCGG AAGAAGCAAA AGCGGGCCGT GTTGATCTGC GCGATTTACC GCTGGTCACC ATTGATGGCG AAGACGCCCG TGACTTTGAC GATGCAGTTT ACTGCGAGAA AAAACGCGGC GGCGGCTGGC GTTTATGGGT CGCGATTGCC GACGTCAGCT ACTATGTGCG TCCGTCAACG CCGCTGGACA GAGAAGCGCG TAACCGTGGC ACGTCGGTGT ACTTCCCTTC GCAGGTTATC CCGATGCTGC CGGAAGTGCT CTCTAACGGC CTGTGTTCGC TCAACCCGCA GGTAGACCGC CTGTGTATGG TGTGCGAGAT GACGGTTTCG TCGAAAGGCC GCCTGACGGG CTACAAATTC TACGAAGCGG TGATGAGCTC TCACGCGCGT CTGACCTACA CCAAAGTCTG GCATATTCTG CAGGGCGATC AGGATCTGCG CGAGCAGTAC GCCCCGCTGG TTAAGCATCT CGAAGAGTTG CATAACCTCT ATAAAGTGCT GGATAAAGCC CGTGAAGAAC GCGGTGGGAT CTCATTTGAG AGCGAAGAAG CGAAGTTCAT TTTCAACGCT GAACGCCGTA TTGAACGTAT CGAACAGACC CAGCGTAACG ACGCGCACAA ATTAATTGAA GAGTGCATGA TTCTGGCGAA TATCTCGGCG GCGCGTTTCG TTGAGAAAGC GAAAGAACCG GCACTGTTCC GTATTCACGA CAAGCCGAGC ACCGAAGCGA TTACCTCTTT CCGTTCAGTG CTGGCGGAGC TGGGGCTGGA ACTGCCGGGC GGTAACAAGC CGGAACCGCG TGACTACGCG GAGCTGCTGG AGTCGGTTGC CGATCGTCCT GATGCAGAAA TGCTGCAAAC CATGCTGCTG CGCTCGATGA AACAGGCGAT TTACGATCCA GAAAACCGTG GTCACTTTGG CCTGGCATTG CAGTCCTATG CGCACTTTAC TTCGCCGATT CGTCGTTATC CAGACCTGAC GCTGCACCGC GCCATTAAAT ATCTGCTGGC GAAAGAGCAG GGGCATCAGG GCAACACCAC TGAAACCGGC GGCTACCATT ATTCGATGGA AGAGATGCTG CAACTGGGTC AGCACTGTTC GATGGCGGAA CGTCGTGCCG ACGAAGCAAC GCGCGATGTG GCTGACTGGC TGAAGTGTGA CTTCATGCTC GACCAGGTAG GTAACGTCTT TAAAGGCGTA ATTTCCAGCG TCACTGGCTT TGGCTTCTTC GTCCGTCTGG ACGACTTGTT CATTGATGGT CTGGTCCATG TCTCTTCGCT GGACAATGAC TACTATCGCT TTGACCAGGT AGGGCAACGC CTGATGGGGG AATCCAGCGG CCAGACTTAT CGCCTGGGCG ATCGCGTGGA AGTTCGCGTC GAAGCGGTTA ATATGGACGA GCGCAAAATC GACTTTAGCC TGATCTCCAG CGAACGCGCA CCGCGCAACG TCGGTAAAAC GGCGCGCGAG AAAGCGAAAA AAGGCGATGC AGGTAAAAAA GGCGGCAAGC GTCGTCAGGT CGGTAAAAAG GTAAACTTTG AGCCAGACAG CGCCTTCCGC GGTGAGAAAA AAACGAAGCC GAAAGCGGCG AAGAAAGACG CGAGAAAAGC GAAAAAGCCA TCGGCGAAAA CGCAGAAAAT AGCTGCAGCG ACCAAAGCGA AGCGTGCGGC GAAGAAAAAA GTGGCAGAGT GA
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Protein sequence | MSQDPFQERE AEKYANPIPS REFILEHLTK REKPASRDEL AVELHIEGEE QLEGLRRRLR AMERDGQLVF TRRQCYALPE RLDLVKGTVI GHRDGYGFLR VEGRKDDLYL SSEQMKTCIH GDQVLAQPLG ADRKGRREAR IVRVLVPKTS QIVGRYFTEA GVGFVVPDDS RLSFDILIPP DQIMGARMGF VVVVELTQRP TRRTKAVGKI VEVLGDNMGT GMAVDIALRT HEIPYIWPQA VEQQVAGLKE EVPEEAKAGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA DVSYYVRPST PLDREARNRG TSVYFPSQVI PMLPEVLSNG LCSLNPQVDR LCMVCEMTVS SKGRLTGYKF YEAVMSSHAR LTYTKVWHIL QGDQDLREQY APLVKHLEEL HNLYKVLDKA REERGGISFE SEEAKFIFNA ERRIERIEQT QRNDAHKLIE ECMILANISA ARFVEKAKEP ALFRIHDKPS TEAITSFRSV LAELGLELPG GNKPEPRDYA ELLESVADRP DAEMLQTMLL RSMKQAIYDP ENRGHFGLAL QSYAHFTSPI RRYPDLTLHR AIKYLLAKEQ GHQGNTTETG GYHYSMEEML QLGQHCSMAE RRADEATRDV ADWLKCDFML DQVGNVFKGV ISSVTGFGFF VRLDDLFIDG LVHVSSLDND YYRFDQVGQR LMGESSGQTY RLGDRVEVRV EAVNMDERKI DFSLISSERA PRNVGKTARE KAKKGDAGKK GGKRRQVGKK VNFEPDSAFR GEKKTKPKAA KKDARKAKKP SAKTQKIAAA TKAKRAAKKK VAE
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