Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECD_03504 |
Symbol | yicF |
ID | 0 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli BL21(DE3) |
Kingdom | Bacteria |
Replicon accession | CP001509 |
Strand | - |
Start bp | 3686280 |
End bp | 3687962 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | |
Product | NAD-dependent DNA ligase LigB |
Protein accession | ACT45302 |
Protein GI | 253979632 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTAT GGATGGCGAT ATTAATAAGT ATCTTGTGCT GGCAATCATC TGTGTGGGCG GTCTGTCCGG CCTGGTCGCC AGCCAGAGCA CAGGAAGAAA TTTCCCGCCT GCAACAGCAA ATAAAACAGT GGGACGATGA CTACTGGAAG GAAGGAAAAA GTGAGGTGGA AGACGGTGTT TACGATCAGT TAAGCGCCCG TCTTACGCAG TGGCAACGCT GCTTTGGGAG CGAGCCCCGC GACGTGATGA TGCCGCCTTT AAATGGTGCG GTTATGCATC CGGTTGCCCA TACGGGTGTA CGCAAAATGG TGGATAAAAA CGCATTAAGT CTGTGGATGC GAGAACGTAG CGATCTTTGG GTGCAGCCAA AAGTTGATGG CGTTGCGGTA ACCCTGGTTT ATCGGGACGG GAAACTGAAC AAAGCAATCA GTCGCGGTAA TGGCCTGAAA GGCGAGGACT GGACGCAGAA AGTTAGCTTA ATTTCCGCTG TGCCGCAAAC CGTTAGCGGG CCTTTAGCCA ACAGTACGCT TCAGGGGGAA ATATTTCTCC AGCGCGAGGG GCATATCCAA CAACAAATGG GGGGAATAAA TGCCCGCGCA AAAGTTGCTG GCTTGATGAT GCGCCAGGAC GATAGCGACA CGCTGAATTC TCTGGGCGTT TTTGTCTGGG CATGGCCGGA TGGACCGCAG TTAATGTCTG ATCGTTTAAA AGAGCTGGCT ACCGCAGGTT TTACTCTAAC GCAGACGTAT ACCCGTGCGG TGAAAAATGC TGATGAAGTT GCGCGCGTAC GCAATGAGTG GTGGAAAGCG GAATTACCCT TCGTCACCGA TGGCGTAGTT GTACGAGCGG CGAAAGAGCC AGAATCCCGC CATTGGCTAC CGGGCCAGGC AGAGTGGCTG GTGGCCTGGA AATATCAACC TGTAGCTCAG GTTGCCGAAG TGAAGGCAAT TCAGTTTGCG GTGGGTAAGA GCGGTAAAAT ATCGGTGGTT GCGTCACTCG CACCTGTCAT GCTGGATGAT AAAAAAGTCC AGCGGGTGAA TATTGGTTCC GTCAGGCGCT GGCAGGAGTG GGATATTGCG CCTGGTGATC AGATTCTCGT CAGCCTTGCC GGTCAGGGTA TTCCTCGCAT TGATGATGTG GTGTGGCGCG GTGCAGAACG TACAAAACCG ACACCGCCAG AAAACCGCTT TAACTCGTTG ACCTGCTACT TTGCTTCTGA TGTTTGTCAG GAACAGTTCA TTTCACGCTT AGTCTGGCTG GGGGCAAAAC AGGTTCTTGG GCTGGATGGC ATTGGTGAGG CCGGCTGGCG CGCGCTGCAT CAGACTCATC GCTTTGAGCA TATCTTTTCC TGGCTTTTAT TAACGCCAGA GCAATTACAG AACACGCCGG GGATCGCGAA AAGTAAAAGT GCGCAGCTAT GGCATCAGTT TAATCTGGCT CGTAAGCAGC CTTTTACTCG CTGGGTGATG GCAATGGGAA TACCGCTAAC CCGGGCGGCG CTTAATGCCA GTGATGAACG GTCCTGGTCG CAACTTTTAT TTAGCACGGA GCAGTTCTGG CAGCAGCTGC CGGGCACTGG ATCGGGGCGC GCCAGACAGG TTATTGAATG GAAGGAAAAT GCGCAAATCA AGAAGCTGGG CAGTTGGCTG GCTGCCCAGC AGATCACAGG TTTTGAACCT TAG
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Protein sequence | MKVWMAILIS ILCWQSSVWA VCPAWSPARA QEEISRLQQQ IKQWDDDYWK EGKSEVEDGV YDQLSARLTQ WQRCFGSEPR DVMMPPLNGA VMHPVAHTGV RKMVDKNALS LWMRERSDLW VQPKVDGVAV TLVYRDGKLN KAISRGNGLK GEDWTQKVSL ISAVPQTVSG PLANSTLQGE IFLQREGHIQ QQMGGINARA KVAGLMMRQD DSDTLNSLGV FVWAWPDGPQ LMSDRLKELA TAGFTLTQTY TRAVKNADEV ARVRNEWWKA ELPFVTDGVV VRAAKEPESR HWLPGQAEWL VAWKYQPVAQ VAEVKAIQFA VGKSGKISVV ASLAPVMLDD KKVQRVNIGS VRRWQEWDIA PGDQILVSLA GQGIPRIDDV VWRGAERTKP TPPENRFNSL TCYFASDVCQ EQFISRLVWL GAKQVLGLDG IGEAGWRALH QTHRFEHIFS WLLLTPEQLQ NTPGIAKSKS AQLWHQFNLA RKQPFTRWVM AMGIPLTRAA LNASDERSWS QLLFSTEQFW QQLPGTGSGR ARQVIEWKEN AQIKKLGSWL AAQQITGFEP
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