| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECD_03423 |
|---|
| Symbol | malS |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21(DE3) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001509 |
|---|
| Strand | + |
|---|
| Start bp | 3599649 |
|---|
| End bp | 3601679 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | periplasmic alpha-amylase precursor |
|---|
| Protein accession | ACT45222 |
|---|
| Protein GI | 253979552 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCG CCGCCTGTTT TCTGACACTC CTTCCTGGCT TCGCCGTTGC CGCCAGCTGG
ACTTCTCCGG GGTTTCCCGC CTTTAGCGAA CAGGGGACAG GAACATTTGT CAGCCACGCG
CAGTTGCCCA AAGGTACGCG TCCACTAACG CTAAATTTTG ACCAACAGTG CTGGCAGCCT
GCGGATGCGA TAAAACTCAA TCAGATGCTT TCCCTGCAAC CTTGTAGCAA CACGCCGCCT
CAATGGCGAT TGTTCAGGGA CGGCGAATAT ACGCTGCAAA TAGACACCCG CTCCGGTACG
CCAACATTGA TGATTTCCAT CCAGAACGCC GCCGAACCGG TAGCAAGCCT GGTCCGTGAA
TGCCCGAAAT GGGATGGATT ACCGCTCACA GTGGATGTCA GCGCCACTTT CCCGGAAGGA
GCCGCCGTAC GGGATTATTA CAGCCAGCAA ATTGCGATAG TGAAGAACGG TCAAATAATG
TTACAACCCG CTGCCACCAG CAACGGTTTA CTCCTGCTGG AACGGGCAGA AACTGACACA
TCCGCCCCTT TCGACTGGCA TAACGCCACG GTTTACTTTG TGCTGACAGA TCGTTTCGAA
AACGGCGATC CCAGTAATGA CCAGAGTTAC GGACGTCATA AAGACGGTAT GGCGGAAATT
GGCACTTTTC ACGGCGGCGA TTTACGCGGC CTGACCAACA AACTGGATTA CCTCCAGCAG
TTGGGCGTTA ATGCTTTATG GATAAGCGCC CCATTTGAGC AAATTCACGG CTGGGTCGGC
GGCGGTACAA AAGGCGATTT CCCGCATTAT GCCTACCACG GTTATTACAC ACAGGACTGG
ACGAATCTTG ATGCCAATAT GGGCAACGAA GCCGATCTAC GGACGCTGGT TGATAGCGCA
CATCAGCGCG GTATTCGTAT TCTCTTTGAT GTCGTGATGA ACCACACCGG CTATGCCACG
CTGGCGGATA TGCAGGAGTA TCAGTTTGGC GCGTTATATC TTTCTGGTGA CGAAGTGAAA
AAATCGCTGG GTGAACGCTG GAGCGACTGG AAACCTGCCG CCGGGCAAAC CTGGCATAGC
TTTAACGATT ACATTAATTT CAGCGACAAA ACAGGCTGGG ATAAATGGTG GGGAAAAAAC
TGGATCAGAA CGGATATCGG CGATTACGAC AATCCTGGAT TCGACGATCT CACTATGTCG
CTAGCCTTTT TGCCGGATAT CAAAACCGAA TCAACTACCG CTTCTGGTCT GCCGGTGTTC
TATAAAAACA AAATGGATAC CCACGCCAAA GCCATTGACG GCTATACGCC GCGCGATTAC
TTAACCCACT GGTTAAGTCA GTGGGTCCGC GACTATGGGA TTGATGGTTT TCGGGTCGAT
ACCGCCAAAC ATGTTGAGTT GCCCGCCTGG CAGCAACTGA AAACCGAAGC CAGCACCGCG
CTTCGCGAAT GGAAAAAAGC TAACCCCGAC AAAGCATTAG ATGACAAACC TTTCTGGATG
ACCGGTGAAG CCTGGGGCCA CGGCGTGATG CAAAGTGACT ACTATCGCCA CGGCTTCGAT
GCGATGATCA ATTTCGATTA TCAGGAGCAG GCGGCGAAAG CAGTCGACTG TCTGGCGCAG
ATGGATACGA CCTGGCAGCA AATGGCGGAG AAATTGCAGG GTTTCAACGT GTTGAGCTAC
CTCTCGTCGC ATGATACCCG CCTGTTCCGT GAAGGGGGCG ACAAAGCAGC AGAGTTATTA
CTATTAGCGC CAGGCGCGGT ACAAATCTTT TATGGTGATG AATCCTCGCG TCCGTTCGGT
CCTACAGGTT CTGATCCGCT GCAAGGTACA CGTTCGGATA TGAACTGGCA GGATGTTAGC
GGTAAATCTG CCGCCAGCGT CGCGCACTGG CAGAAAATCA GCCAGTTCCG CGCCCGCCAT
CCCGCAATTG GCGCGGGCAA ACAAACGACA CTTTTGCTGA AGCAGGGCTA CGGCTTTGTT
CGTGAGCATG GCGACGATAA AGTGCTGGTC GTCTGGGCAG GGCAACAGTA A
|
|---|
| Protein sequence | MKLAACFLTL LPGFAVAASW TSPGFPAFSE QGTGTFVSHA QLPKGTRPLT LNFDQQCWQP
ADAIKLNQML SLQPCSNTPP QWRLFRDGEY TLQIDTRSGT PTLMISIQNA AEPVASLVRE
CPKWDGLPLT VDVSATFPEG AAVRDYYSQQ IAIVKNGQIM LQPAATSNGL LLLERAETDT
SAPFDWHNAT VYFVLTDRFE NGDPSNDQSY GRHKDGMAEI GTFHGGDLRG LTNKLDYLQQ
LGVNALWISA PFEQIHGWVG GGTKGDFPHY AYHGYYTQDW TNLDANMGNE ADLRTLVDSA
HQRGIRILFD VVMNHTGYAT LADMQEYQFG ALYLSGDEVK KSLGERWSDW KPAAGQTWHS
FNDYINFSDK TGWDKWWGKN WIRTDIGDYD NPGFDDLTMS LAFLPDIKTE STTASGLPVF
YKNKMDTHAK AIDGYTPRDY LTHWLSQWVR DYGIDGFRVD TAKHVELPAW QQLKTEASTA
LREWKKANPD KALDDKPFWM TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCLAQ
MDTTWQQMAE KLQGFNVLSY LSSHDTRLFR EGGDKAAELL LLAPGAVQIF YGDESSRPFG
PTGSDPLQGT RSDMNWQDVS GKSAASVAHW QKISQFRARH PAIGAGKQTT LLLKQGYGFV
REHGDDKVLV VWAGQQ
|
|---|
| |