| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECD_03273 |
|---|
| Symbol | rtcR |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21(DE3) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001509 |
|---|
| Strand | + |
|---|
| Start bp | 3418564 |
|---|
| End bp | 3420162 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | sigma 54-dependent transcriptional regulator of rtcBA expression |
|---|
| Protein accession | ACT45076 |
|---|
| Protein GI | 253979406 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.385155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAAA CAGTGGCTTT TGGCTTTGTC GGTACCGTGC TGGATTATGC CGGGCGCGGC
AGTCAGCGCT GGTCGAAATG GCTTCCGACA CTCTGTTTAT GCCAGCAAGA ATCGTTGGTC
ATCGATCGAC TGGAATTATT GCATGACGCC CGCTCGCGCT CGCTATTTGA AACGCTTAAA
CGCGATATCG CCAGCGTTTC GCCAGAAACA GAAGTGGTGA GCGTTGAGAT TGAACTGCAT
AACCCGTGGG ATTTCGAAGA GGTTTACGCT TGCCTGCATG ATTTCGCCCG TGGTTACGAG
TTTCAGCCAG AAAAAGAAGA CTATTTAATT CACATTACCA CCGGCACCCA CGTCGCGCAG
ATTTGCTGGT TTCTGCTGGC GGAAGCGCGT TACCTGCCCG CCCGGCTGAT ACAATCTTCA
CCTCCGCGCA AAAAAGAACA GCCGCGCGGC GCAGGTGAAG TGACGATTAT CGATCTCGAT
TTAAGCCGTT ATAACGCCAT CGCCAGCCGC TTTGCCGAGG AACGCCAGCA AACGCTTGAT
TTTCTTAAGT CCGGCATTGC CACGCGTAAC CCCCACTTCA ACCGCATGAT TGAGCAGATC
GAAAAAGTGG CGATCAAATC CCGCGCGCCG ATTCTGCTTA ACGGTCCAAC CGGCGCGGGC
AAGTCATTTC TGGCGCGACG CATCTTCGAG TTAAAACAGG CGCGGCATCA GTTTAGCGGC
GCGTTTGTGG AAGTGAACTG CGCCACCCTG CGCGGCGATA CCGCCATGTC GACGCTGTTT
GGTCATGTAA AAGGCGCGTT TACCGGGGCG CGGGAATCTC GTGAAGGTTT ATTACGCAGC
GCCAACGGCG GAATGTTGTT TCTTGATGAG ATTGGCGAAC TGGGCGCAGA CGAACAAGCA
ATGCTGCTAA AAGCCATTGA AGAGAAAACC TTTTACCCGT TTGGCAGCGA TCGCCAGGTG
AGCAGTGATT TTCAGCTTAT CGCCGGAACG GTGCGCGATT TGCGCCAGCT GGTTGCCGAA
GGCAAATTCC GCGAAGATCT GTACGCGCGG ATCAATCTCT GGACCTTCAC CCTGCCGGGG
CTACGCCAGC GCCAGGAAGA TATTGAACCT AACCTGGATT ATGAAGTGGA GCGCCACGCC
TCACTCACCG GCGACAGCGT GCGTTTTAAC ACCGAAGCGC GGCGTGCCTG GCTGGCCTTT
GCAACATCTC CTCAGGCGAC ATGGCGCGGT AACTTTCGCG AGCTTTCTGC CAGCGTCACG
CGGATGGCAA CCTTTGCCAC TAGCGGACGC ATCACTCTGG ACGTGGTTGA AGATGAGATA
AACCGTCTGC GCTATAACTG GCAGGAGAGC CGTCCCTCCG CGCTTACGCA ACTGCTGGGC
GCAGAGGCAG AAAACATCGA TCTCTTCGAC CGTATGCAAC TGGAACACGT TATCGCTATC
TGCCGCCAGG CAAAGTCGCT TTCTGCTGCC GGACGACAGC TTTTTGATGT TTCGCGCCAG
GGCAAAGCCA GCGTCAATGA CGCGGATCGG CTACGCAAAT ACCTGGCGCG TTTTGGTCTG
ACCTGGGAAG CATTGCAGGA TCAGCACAGC TCCAGTTGA
|
|---|
| Protein sequence | MRKTVAFGFV GTVLDYAGRG SQRWSKWLPT LCLCQQESLV IDRLELLHDA RSRSLFETLK
RDIASVSPET EVVSVEIELH NPWDFEEVYA CLHDFARGYE FQPEKEDYLI HITTGTHVAQ
ICWFLLAEAR YLPARLIQSS PPRKKEQPRG AGEVTIIDLD LSRYNAIASR FAEERQQTLD
FLKSGIATRN PHFNRMIEQI EKVAIKSRAP ILLNGPTGAG KSFLARRIFE LKQARHQFSG
AFVEVNCATL RGDTAMSTLF GHVKGAFTGA RESREGLLRS ANGGMLFLDE IGELGADEQA
MLLKAIEEKT FYPFGSDRQV SSDFQLIAGT VRDLRQLVAE GKFREDLYAR INLWTFTLPG
LRQRQEDIEP NLDYEVERHA SLTGDSVRFN TEARRAWLAF ATSPQATWRG NFRELSASVT
RMATFATSGR ITLDVVEDEI NRLRYNWQES RPSALTQLLG AEAENIDLFD RMQLEHVIAI
CRQAKSLSAA GRQLFDVSRQ GKASVNDADR LRKYLARFGL TWEALQDQHS SS
|
|---|
| |