| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECD_02293 |
|---|
| Symbol | ypdD |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21(DE3) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001509 |
|---|
| Strand | - |
|---|
| Start bp | 2379876 |
|---|
| End bp | 2382371 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component |
|---|
| Protein accession | ACT44114 |
|---|
| Protein GI | 253978444 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAACGA TTCAATTTCT CTGTCCTTTG CCTAACGGTC TACATGCTCG TCCGGCGTGG
GAACTTAAAG AACAGTGCAG CCAGTGGCAA AGCGAAATCA CTTTTATTAA CCATCGCCAG
AACGCAAAGG CAGATGCGAA AAGCTCGCTG GCGCTGATTG GCACCGGCAC CCTATTTAAT
GACAGTTGCA GCCTGAACAT TAGCGGCAGC GATGAAGAGC AGGCGCGGCG CGTGCTGGAA
GAGTACATCC AGGTGCGCTT TATCGACAGC GACAGCGTTC AGCCTACGCA GGCAGAACTG
ACGGCGCATC CGCTGCAGCG TTCATTAAGC CGCCTTAACC CGGATTTACT GTACGGCAAT
GTGCTGGCAA GCGGCGTCGG CGTGGGTACG CTGACCCTGT TACAAAGCGA CAGCCTCGAC
AGTTATCGGG CAATCCCCGC CAGTGCGCAA GATTCCACCC GGCTGGAGCA CAGCCTGGCA
ACGCTTGCCG AGCAACTGAA CCAGCAATTG CGTGAGCGTG ACGGCGAAAG CAAAACTATC
CTCAGCGCCC ATTTGTCGCT GATTCAGGAT GATGAATTTG CAGGCAATAT CCGTCGCCTG
ATGACAGAAC AGCCTCAGGG GCTGGGGGCG GCGATCATCA GCAATATGGA GCAGGTTTGC
GCCAAACTTT CTGCCTCTGC CAGCGATTAT CTGCGCGAAC GTGTTAGCGA CATTCGCGAT
ATCAGCGAAC AGTTGCTGCA TATCACCTGG CCGGAACTGA AGCCGCGCAA CAAGCTGGTG
CTTGAAAAAC CGACCATTCT GGTGGCTGAA GATTTAACCC CAAGCCAGTT TTTGAGCCTT
GATTTGAAAA ATCTTGCGGG CATGATTCTG GAGAAAACCG GGCGCACCTC GCATACACTG
ATTCTGGCCC GTGCCTCGGC GATCCCGGTA CTGAGTGGCT TGCCGCTGGA TGCGATTGCC
CGTTATGCCG GGCAACCTGC AGTGCTTGAC GCCCAGTGCG GCGTGCTGGC GATTAACCCG
AATGACGCGG TGAGCGGTTA TTATCAGGTC GCGCAGACGC TGGCGGATAA ACGCCAAAAA
CAACAGGCGC AGGCTGCCGC GCAGCTGGCC TATTCCCGTG ATAACAAGCG TATTGATATT
GCGGCGAATA TCGGCACCGC TCTGGAAGCG CCAGGCGCGT TTGCCAACGG CGCGGAAGGT
GTCGGGCTGT TCCGTACCGA AATGCTCTAT ATGGATCGCG ACAGCGCGCC GGACGAGCAG
GAGCAATTTG AAGCCTACCA GCAGGTGCTA CTGGCGGCGG GCGACAAGCC GATTATCTTC
CGCACGATGG ACATCGGCGG CGATAAAAGC ATTCCTTATC TGAATATTCC CCAGGAAGAG
AACCCGTTCC TCGGCTATCG CGCGGTACGT ATTTACCCGG AATTTGCTGG CCTGTTCCGC
ACTCAACTGC GGGCCATTTT GCGCGCCGCC AGTTTCGGCA ACGCCCAGTT GATGATCCCG
ATGGTTCACA GCCTCGATCA GATCTTATGG GTGAAAGGCG AGATCCAAAA AGCGATCGTT
GAGCTTAAGC GCGATGGCCT GCGTCATGCA GAGACGATTA CGCTTGGGAT CATGGTGGAA
GTTCCGTCGG TGTGCTACAT CATCGACCAC TTCTGCGATG AGGTCGATTT CTTCAGTATC
GGCTCCAACG ATATGACCCA GTATCTGTAT GCGGTCGATC GTAATAACCC GCGCGTATCG
CCGCTATATA ACCCGATTAC GCCATCGTTC CTGCGCATGT TGCAGCAAAT AGTTACCACT
GCGCATCAGC GGGGCAAATG GGTAGGCATT TGCGGTGAAC TGGGCGGTGA AAGCCGTTAT
CTGCCGCTAC TGCTTGGGCT GGGCCTGGAT GAGCTGAGTA TGAGTAGCCC GCGTATTCCG
GCGGTGAAAA GCCAGCTTCG TCAACTGGAT AGCGAGGCGT GTCGGGAACT GGCGCGTCAG
GCATGTGAAT GCCGCAGTGC GCAGGAAATT GAAGCGTTAC TCACCGCCTT TACGCCGGAA
GAAGACGTTC GCCCACTGCT GGCGCTGGAG AATATCTTTG TTGATCAGGA TTTTAGCAAT
AAAGAGCAGG CGATCCAGTT CCTGTGCGGC AACCTCGGCG TTAACGGGCG CACTGAACAT
CCGTTTGAGC TGGAAGAAGA TGTCTGGCAG CGGGAAGAGA TTGTTACCAC CGGCGTTGGT
TTTGGCGTAG CGATCCCGCA CACCAAATCT CAGTGGATCC GTCATTCCAG TATCAGCATT
GCCCGGCTGG CGAAACCGAT TGACTGGCAG TCAGAAATGG GCGAAGTCGA ACTGGTGATC
ATGCTGACGC TGGGTGCTAA CGAAGGGATG AATCATGTGA AAGTCTTCTC GCAGCTGGCG
CGTAAACTGG TGAATAAAAA CTTCCGCCAG TCGTTGTTTG CCGCGCAAGA TGCACAAAGT
ATCCTGACGC TGCTGGAAAC AGAATTAACC TTCTGA
|
|---|
| Protein sequence | MLTIQFLCPL PNGLHARPAW ELKEQCSQWQ SEITFINHRQ NAKADAKSSL ALIGTGTLFN
DSCSLNISGS DEEQARRVLE EYIQVRFIDS DSVQPTQAEL TAHPLQRSLS RLNPDLLYGN
VLASGVGVGT LTLLQSDSLD SYRAIPASAQ DSTRLEHSLA TLAEQLNQQL RERDGESKTI
LSAHLSLIQD DEFAGNIRRL MTEQPQGLGA AIISNMEQVC AKLSASASDY LRERVSDIRD
ISEQLLHITW PELKPRNKLV LEKPTILVAE DLTPSQFLSL DLKNLAGMIL EKTGRTSHTL
ILARASAIPV LSGLPLDAIA RYAGQPAVLD AQCGVLAINP NDAVSGYYQV AQTLADKRQK
QQAQAAAQLA YSRDNKRIDI AANIGTALEA PGAFANGAEG VGLFRTEMLY MDRDSAPDEQ
EQFEAYQQVL LAAGDKPIIF RTMDIGGDKS IPYLNIPQEE NPFLGYRAVR IYPEFAGLFR
TQLRAILRAA SFGNAQLMIP MVHSLDQILW VKGEIQKAIV ELKRDGLRHA ETITLGIMVE
VPSVCYIIDH FCDEVDFFSI GSNDMTQYLY AVDRNNPRVS PLYNPITPSF LRMLQQIVTT
AHQRGKWVGI CGELGGESRY LPLLLGLGLD ELSMSSPRIP AVKSQLRQLD SEACRELARQ
ACECRSAQEI EALLTAFTPE EDVRPLLALE NIFVDQDFSN KEQAIQFLCG NLGVNGRTEH
PFELEEDVWQ REEIVTTGVG FGVAIPHTKS QWIRHSSISI ARLAKPIDWQ SEMGEVELVI
MLTLGANEGM NHVKVFSQLA RKLVNKNFRQ SLFAAQDAQS ILTLLETELT F
|
|---|
| |