| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECD_02292 |
|---|
| Symbol | ypdC |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21(DE3) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001509 |
|---|
| Strand | + |
|---|
| Start bp | 2379016 |
|---|
| End bp | 2379873 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted DNA-binding protein |
|---|
| Protein accession | ACT44113 |
|---|
| Protein GI | 253978443 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAC CAGGCTTGCC CGCCGATCAA CAATTTTTCG CCGATCTGTT CAGCGGCCTG
GTGCTTAACC CGCAACTACT GGGGCGCGTC TGGTTTGCCA GCCAGCCTGC CTCGTTGCCG
GTGGGCAGTT TATGTATTGA TTTTCCCCGT CTGGATATCG TGCTGCGCGG CGAATACGGC
AACCTGCTGG AAGCAAAGCA GCAGCGAATG GTGGAAGGAG AAATGCTGTT TATTCCGGCA
CGCGCGGCTA ATTTACCGAT CAACAACAAA CCGGTGATGC TGTTAAGCCT GGTGTTCGCA
CCGACCTGGC TTGGGTTATC GTTTTACGAT AGCCGCACCA CGTCGTTGTT GCATCCTGCT
CGCCAGATCC AGCTTCCCAG CCTGCAACGC GGTGAAGGTG AAGCGATGCT TACCGCCCTC
ACTCATCTTA GCCGTTCGCC GCTGGAGCAG AATATCATTC AGCCACTGGT GTTAAGTTTG
CTGCATCTTT GCCGCAACGT GGTGAATATG CCGCCGGGTA ATTCGCAACC GCGCGGCGAT
TTTCTCTATC ACAGCATTTG TAACTGGGTT CAGGATAATT ATGCCCAGCC GCTCACCCGC
GAGAGCGTGG CGCAGTTTTT TAATATCACG CCCAATCATC TGTCAAAACT GTTTGCTCAG
CATGGAACGA TGCGTTTTAT CGAGTATGTG CGTTGGGTGC GAATGGCGAA GGCGAGGATG
ATTTTGCAGA AATATCATCT GTCAATTCAT GAAGTGGCAC AGCGTTGCGG TTTTCCGGAT
AGCGACTATT TTTGTCGCGT TTTCCGGCGT CAGTTTGGTC TGACGCCGGG AGAGTACAGC
GCCCGTTTTC AGGGCTAA
|
|---|
| Protein sequence | MKAPGLPADQ QFFADLFSGL VLNPQLLGRV WFASQPASLP VGSLCIDFPR LDIVLRGEYG
NLLEAKQQRM VEGEMLFIPA RAANLPINNK PVMLLSLVFA PTWLGLSFYD SRTTSLLHPA
RQIQLPSLQR GEGEAMLTAL THLSRSPLEQ NIIQPLVLSL LHLCRNVVNM PPGNSQPRGD
FLYHSICNWV QDNYAQPLTR ESVAQFFNIT PNHLSKLFAQ HGTMRFIEYV RWVRMAKARM
ILQKYHLSIH EVAQRCGFPD SDYFCRVFRR QFGLTPGEYS ARFQG
|
|---|
| |