| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECD_02191 |
|---|
| Symbol | menD |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21(DE3) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001509 |
|---|
| Strand | - |
|---|
| Start bp | 2267763 |
|---|
| End bp | 2269433 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase |
|---|
| Protein accession | ACT44014 |
|---|
| Protein GI | 253978344 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTAA GCGCATTTAA CCGACGCTGG GCGGCGGTCA TTCTGGAAGC ATTAACGCGT
CACGGCGTCA GACACATCTG TATCGCCCCA GGCTCGCGTT CTACACCGTT AACGTTAGCG
GCGGCGGAGA ATTCCGCATT CATTCACCAC ACCCATTTCG ATGAGCGTGG GTTGGGGCAT
CTGGCGCTGG GGCTGGCGAA AGTCAGCAAG CAGCCGGTGG CGGTGATTGT GACCTCCGGC
ACGGCGGTGG CAAATCTCTA TCCGGCACTG ATTGAAGCCG GGTTAACCGG AGAAAAACTG
ATTCTCTTAA CCGCCGATCG CCCGCCGGAG CTAATTGACT GCGGCGCGAA TCAGGCAATT
CGCCAGCCGG GAATGTTCGC CTCTCACCCC ACGCACAGTA TTTCATTGCC GCGCCCGACC
CAGGATATCC CCGCACGTTG GCTGGTTTCT ACCATCGACC ACGCTCTCGG TACGCTTCAT
GCGGGGGGAG TCCATATCAA CTGCCCGTTT GCTGAACCGC TGTATGGCGA AATGGACGAT
ACCGGGCTTA GCTGGCAACA GCGTCTGGGT GACTGGTGGC AGGACGACAA ACCGTGGCTG
CGTGAAGCGC CTCGTCTGGA AAGTGAAAAA CAGCGCGACT GGTTCTTCTG GCGACAAAAG
CGCGGCGTGG TGGTTGCCGG GCGCATGAGT GCGGAAGAGG GCAAAAAAGT TGCCCTGTGG
GCGCAAACTC TTGGCTGGCC GCTGATTGGC GATGTGCTGT CACAAACCGG GCAGCCGCTG
CCGTGTGCCG ATCTTTGGTT AGGCAATGCC AAAGCGACCA GCGAGCTGCA GCAGGCGCAA
ATTGTGGTGC AACTGGGAAG CAGCCTGACG GGGAAACGGC TCCTGCAATG GCAGGCAAGC
TGTGAACCAG AAGAGTACTG GATTGTTGAT GACATTGAAG GGCGACTTGA TCCGGCACAC
CATCGCGGAC GTCGCTTAAT TGCCAATATT GCCGACTGGC TGGAGCTGCA TCCGGCAGAA
AAACGCCAGC CCTGGTGCGT TGAAATCCCG CGCCTGGCGG AACAGGCAAT GCAGGCGGTT
ATTGCCCGCC GTGATGCGTT TGGCGAAGCG CAACTGGCGC ATCGCATCTG CGACTATCTG
CCTGAACAGG GGCAATTGTT TGTTGGTAAC AGCCTGGTGG TACGTCTGAT TGATGCGCTT
TCGCAACTTC CGGCAGGTTA CCCGGTGTAC AGCAACCGTG GGGCCAGCGG TATCGACGGG
CTGCTTTCGA CCGCCGCCGG CGTTCAGCGG GCAAGCGGCA AACCGACGCT GGCGATTGTG
GGCGATCTCT CCGCACTTTA CGATCTCAAC GCGCTGGCGT TATTGCGTCA GGTTTCTGCG
CCGCTGGTAT TAATTGTGGT GAACAACAAC GGCGGGCAAA TTTTCTCGCT GTTGCCAACG
CCGCAAAGCG AGCGTGAGCG TTTCTATCTG ATGCCGCAAA ACGTCCATTT TGAGCACGCC
GCCGCGATGT TCGAGCTGAA ATATCATCGT CCGCAAAACT GGCAGGAACT TGAAACGGCA
TTTGCCGACG CCTGGCGCAC GCCAACCACC ACGGTGATTG AAATGGTGGT TAACGACACC
GATGGTGCGC AAACGCTCCA GCAACTTCTG GCGCAGGTAA GCCATTTATG A
|
|---|
| Protein sequence | MSVSAFNRRW AAVILEALTR HGVRHICIAP GSRSTPLTLA AAENSAFIHH THFDERGLGH
LALGLAKVSK QPVAVIVTSG TAVANLYPAL IEAGLTGEKL ILLTADRPPE LIDCGANQAI
RQPGMFASHP THSISLPRPT QDIPARWLVS TIDHALGTLH AGGVHINCPF AEPLYGEMDD
TGLSWQQRLG DWWQDDKPWL REAPRLESEK QRDWFFWRQK RGVVVAGRMS AEEGKKVALW
AQTLGWPLIG DVLSQTGQPL PCADLWLGNA KATSELQQAQ IVVQLGSSLT GKRLLQWQAS
CEPEEYWIVD DIEGRLDPAH HRGRRLIANI ADWLELHPAE KRQPWCVEIP RLAEQAMQAV
IARRDAFGEA QLAHRICDYL PEQGQLFVGN SLVVRLIDAL SQLPAGYPVY SNRGASGIDG
LLSTAAGVQR ASGKPTLAIV GDLSALYDLN ALALLRQVSA PLVLIVVNNN GGQIFSLLPT
PQSERERFYL MPQNVHFEHA AAMFELKYHR PQNWQELETA FADAWRTPTT TVIEMVVNDT
DGAQTLQQLL AQVSHL
|
|---|
| |