| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECD_01177 |
|---|
| Symbol | ycgV |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21(DE3) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001509 |
|---|
| Strand | - |
|---|
| Start bp | 1241233 |
|---|
| End bp | 1244100 |
|---|
| Gene Length | 2868 bp |
|---|
| Protein Length | 955 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted adhesin |
|---|
| Protein accession | ACT43069 |
|---|
| Protein GI | 253977399 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATCA AACAACACAA TGGGAATACC AAAGCAGATC GTCTCGCTGA ATTAAAAATC
CGTTCGCCCT CAATTCAACT GATAAAATTT GGCGCTATTG GTTTGAATGC AATTATATTT
CCCCCCCTGC TGATAGCTGC TGATACAGGA AGTCAATATG GCACCAATAT TACTATTAAT
GATGGTGACA GAATTACAGG AGATACCGCC GATCCATCAG GAAACCTCTA TAGTGTAATG
ACCCCAGCAG GAAACACGCC TGGCAATATC AACCTGGGTA ATGATGTCAC CGTCAATGTC
AACGACGCCT CTGGATATGC AAAAGGAATC ATTATTCAGG GCAAAAACAG CTCCCTGACA
GCTAACCGAC TCACAGTAGA TGTTGTTGGT CAAACCTCTG CCATCGGCAT TAACTTAATT
GGTGACTATA CCCATGCTGA CTTAGGCACA GGCAGCACCA TTAAGAGTAA CGATGACGGC
ATCATTATTG GGCATAGCTC AACACTAACA GCCACTCAAT TCACCATTGA AAACTCGAAC
GGTATAGGCC TAACCATCAA TGACTATGGC ACCAGTGTCG ATCTTGGAAG CGGAAGTAAA
ATCACGACCG ATGGAAGTAC AGGTGTTTAT ATCGGTGGTC TCAACGGCAA TAACGCCAAT
GGTGCTGCGC GTTTTACGGC TACAGACCTG ACAATCGATG TTCAGGGCTA CAGCGCCATG
GGGATAAACG TACAGAAAAA CTCTGTTGTC GATCTCGGAA CAAACAGTAC CATTAAAACC
AATGGCGATA ATGCTCACGG CCTCTGGAGC TTTGGCCAGG TTAGCGCGAA TGCACTCACT
GTTGATGTAA CTGGAGCCGC GGCCAATGGC GTCGAAGTTC GTGGTGGTAC AACCACTATC
GGTGCAGATA GCCATATTTC TTCCGCGCAG GGCGGTGGCC TCGTCACCAG TGGTTCAGAC
GCGATAATCA ATTTTACTGG CACGGCAGCG CAACGAAACA GCATCTTTTC CGGCGGTTCT
TATGGTGCCT CGGCCCAGAC GGCAACGGCT GTTGTCAACA TGCAAAATAC CGATATTACA
GTTGATCGTA ATGGCAGTCT GGCGCTGGGT TTGTGGGCTC TCAGCGGCGG TAGAATAACC
GGAGACAGTT TGGCTATCAC CGGCGCGGCA GGAGCCAGGG GAATTTATGC CATGACCAAC
AGCCAGATCG ACCTCACGAG CGATCTGGTC ATTGATATGA GTACACCCGA CCAGATGGCC
ATCGCAACGC AACATGACGA TGGTTATGCC GCCAGCCGCA TCAACGCCTC GGGTCGTATG
CTTATCAACG GTAGCGTTCT TTCCAAAGGT GGGCTAATCA ATCTGGATAT GCACCCTGGG
TCGGTTTGGA CAGGTTCCTC CCTCAGCGAT AATGTCAATG GCGGAAAACT GGACGTTGCA
ATGAATAACA GCGTCTGGAA CGTAACAAGT AATTCTAATC TCGACACGCT GGCGCTGAGC
CATTCAACTG TCGATTTTGC CAGCCACGGG TCAACTGCCG GCACATTTGC CACATTAAAC
GTAGAGAACC TGAGCGGTAA CAGTACCTTT ATTATGCGTG CTGATGTTGT TGGCGAGGGT
AATGGCGTTA ATAATAAAGG GGATTTATTG AATATCAGCG GGAGTAGTGC TGGTAATCAC
GTATTGGCTA TCCGCAACCA GGGCAGCGAG GCCACAACGG GAAATGAAGT TCTGACAGTG
GTAAAAACCA CTGACGGCGC GGCCTCGTTC AGCGCGTCTT CTCAGGTTGA GTTGGGGGGA
TATCTGTACG ATGTGCGTAA AAATGGCACT AACTGGGAGC TTTACGCTTC CGGGACAGTT
CCGGAACCGA CTCCTAATCC TGAACCCACA CCAGCTCCCG CTCAGCCTCC CATAGTCAAC
CCCGATCCTA CGCCTGAACC CGCTCCCACG CCTAAACCCA CCACGACCGC AGATGCTGGC
GGCAATTATC TCAATGTCGG TTACTTATTG AACTATGTTG AAAACCGTAC GCTGATGCAA
CGGATGGGTG ACCTGCGAAA TCAGAGTAAA GACGGTAATA TCTGGTTGCG CAGTTATGGG
GGAAGCCTGG ACTCCTTTGC CAGTGGCAAA CTGAGCGGCT TTGACATGGG TTACAGCGGT
ATCCAGTTTG GTGGGGATAA ACGTCTCTCT GATGTAATGC CGTTGTATGT CGGTCTGTAT
ATTGGCTCAA CACATGCATC GCCGGACTAT AGCGGAGGCG ACGGTACCGC ACGTTCAGAC
TACATGGGAA TGTACGCCAG TTACATGGCA CAAAACGGTT TTTACAGCGA TCTCGTTATA
AAAGCATCGC GCCAGAAAAA TAGTTTCCAC GTACTGGACA GTCAGAACAA CGGCGTTAAC
GCCAACGGCA CTGCGAATGG AATGAGCATC TCCCTGGAAG CCGGGCAGAG GTTCAACCTG
TCCCCTACTG GTTATGGGTT CTATATAGAG CCGCAAACCC AGCTTACATA CAGCCACCAG
AATGAGATGA CTATGAAGGC GAGTAATGGC CTCAATATAC ATCTGAATCA CTACGAATCG
CTGCTGGGGC GTGCCAGCAT GATACTGGGG TATGACATCA CCGCAGGCAA CAGCCAGCTG
AATGTCTATG TGAAGACTGG CGCTATCCGC GAGTTTTCAG GGGATACCGA ATATCTGTTG
AACAACTCCC GGGAGAAGTA CAGTTTCAAA GGTAATGGCT GGAATAACGG CGTGGGAGTC
AGTGCACAGT ATAACAAACA GCACACATTC TATCTCGAAG CGGATTACAC GCAGGGTAAC
CTCTTTGATC AGAAGCAAGT CAACGGAGGA TATCGCTTCA GCTTTTAA
|
|---|
| Protein sequence | MGIKQHNGNT KADRLAELKI RSPSIQLIKF GAIGLNAIIF PPLLIAADTG SQYGTNITIN
DGDRITGDTA DPSGNLYSVM TPAGNTPGNI NLGNDVTVNV NDASGYAKGI IIQGKNSSLT
ANRLTVDVVG QTSAIGINLI GDYTHADLGT GSTIKSNDDG IIIGHSSTLT ATQFTIENSN
GIGLTINDYG TSVDLGSGSK ITTDGSTGVY IGGLNGNNAN GAARFTATDL TIDVQGYSAM
GINVQKNSVV DLGTNSTIKT NGDNAHGLWS FGQVSANALT VDVTGAAANG VEVRGGTTTI
GADSHISSAQ GGGLVTSGSD AIINFTGTAA QRNSIFSGGS YGASAQTATA VVNMQNTDIT
VDRNGSLALG LWALSGGRIT GDSLAITGAA GARGIYAMTN SQIDLTSDLV IDMSTPDQMA
IATQHDDGYA ASRINASGRM LINGSVLSKG GLINLDMHPG SVWTGSSLSD NVNGGKLDVA
MNNSVWNVTS NSNLDTLALS HSTVDFASHG STAGTFATLN VENLSGNSTF IMRADVVGEG
NGVNNKGDLL NISGSSAGNH VLAIRNQGSE ATTGNEVLTV VKTTDGAASF SASSQVELGG
YLYDVRKNGT NWELYASGTV PEPTPNPEPT PAPAQPPIVN PDPTPEPAPT PKPTTTADAG
GNYLNVGYLL NYVENRTLMQ RMGDLRNQSK DGNIWLRSYG GSLDSFASGK LSGFDMGYSG
IQFGGDKRLS DVMPLYVGLY IGSTHASPDY SGGDGTARSD YMGMYASYMA QNGFYSDLVI
KASRQKNSFH VLDSQNNGVN ANGTANGMSI SLEAGQRFNL SPTGYGFYIE PQTQLTYSHQ
NEMTMKASNG LNIHLNHYES LLGRASMILG YDITAGNSQL NVYVKTGAIR EFSGDTEYLL
NNSREKYSFK GNGWNNGVGV SAQYNKQHTF YLEADYTQGN LFDQKQVNGG YRFSF
|
|---|
| |