Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECD_01080 |
Symbol | rne |
ID | 0 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli BL21(DE3) |
Kingdom | Bacteria |
Replicon accession | CP001509 |
Strand | - |
Start bp | 1143749 |
End bp | 1146934 |
Gene Length | 3186 bp |
Protein Length | 1061 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | |
Product | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein |
Protein accession | ACT42975 |
Protein GI | 253977305 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00444981 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGAA TGTTAATCAA CGCAACTCAG CAGGAAGAGT TGCGCGTTGC CCTTGTAGAT GGGCAGCGTC TGTATGACCT GGATATCGAA AGTCCAGGGC ACGAGCAGAA AAAGGCAAAC ATCTACAAAG GTAAAATCAC CCGCATTGAA CCGAGTCTGG AAGCTGCTTT TGTTGATTAC GGCGCTGAAC GTCACGGTTT CCTCCCACTA AAAGAAATTG CCCGCGAATA TTTCCCTGCT AACTACAGTG CTCATGGTCG TCCCAACATT AAAGATGTGT TGCGTGAAGG TCAGGAAGTC ATTGTTCAGA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCATTAAC CACCTTTATC AGTCTGGCGG GTAGCTATCT GGTTCTGATG CCGAACAACC CGCGCGCGGG TGGCATTTCT CGCCGTATCG AAGGCGACGA CCGTACCGAA TTAAAAGAAG CACTGGCAAG CCTTGAACTG CCGGAAGGCA TGGGGCTTAT CGTGCGCACC GCTGGCGTCG GCAAATCTGC TGAGGCGCTG CAATGGGATT TAAGCTTCCG TCTGAAACAC TGGGAAGCCA TCAAAAAAGC CGCTGAAAGC CGCCCGGCCC CGTTCCTGAT TCATCAGGAG AGCAACGTAA TCGTTCGCGC ATTCCGCGAT TACTTACGTC AGGACATCGG CGAAATCCTT ATCGATAACC CGAAAGTGCT CGAACTGGCA CGTCAGCATA TCGCTGCATT AGGTCGCCCG GATTTCAGCA GCAAAATCAA ACTGTACACC GGCGAGATCC CGCTGTTCAG CCACTACCAG ATCGAGTCAC AGATCGAGTC CGCCTTCCAG CGTGAAGTTC GTCTGCCGTC TGGTGGTTCC ATTGTTATCG ACAGCACCGA AGCGTTAACG GCCATCGACA TCAACTCCGC ACGCGCGACC CGCGGCGGCG ATATCGAAGA AACCGCGTTT AACACTAACC TCGAAGCTGC CGATGAGATT GCTCGTCAGC TGCGCCTGCG TGACCTCGGC GGCCTGATTG TTATCGACTT CATCGACATG ACGCCAGTAC GCCACCAGCG TGCGGTAGAA AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGTGCGCGTA TTCAAATCAG CCATATTTCT CGCTTTGGCC TGCTGGAAAT GTCCCGTCAG CGCCTGAGCC CATCACTGGG TGAATCCAGC CATCACGTCT GCCCGCGCTG CTCCGGTACC GGTACCGTGC GTGACAACGA ATCGCTGTCG CTCTCTATTC TGCGTCTGAT CGAAGAAGAA GCGCTGAAAG AGAACACCCA GGAAGTTCAC GCCATTGTTC CTGTGCCAAT CGCTTCTTAT CTGCTGAATG AAAAACGTTC TGCGGTGAAT GCCATTGAAA CGCGTCAGGA CGGTGTTCGC TGCGTGATTG TGCCAAACGA TCAGATGGAA ACCCCGCACT ACCACGTGCT GCGCGTGCGT AAAGGGGAAG AAACGCCGAC CTTAAGCTAC ATGCTGCCGA AGCTGCATGA AGAAGCGATG GCGCTGCCGT CTGAAGAAGA GTTCGCTGAA CGTAAGCGTC CGGAACAACC TGCGCTGGCA ACCTTTGCCA TGCCGGATGT GCCGCCAGCG CCAACCCCAG CTGAACCTGC CGCGCCTGTC GTAGCCCCAG CACCTAAATC TGCACCGGCA ACACCAGCCG CTCCTGCCCA ACCTGGGCTG TTGAGCCGCT TCTTCGGCGC ACTGAAAGCG CTGTTCAGCG GTGGTGAAGA AACCAAACCG TCCGAGCAAC CAACACCGAA AGCAGAAGCG AAACCGGAAC GTCAACAGGA TCGTCGCAAG CCTCGTCAGA ACAACCGCCG TGACCGTAAT GAGCGCCGCG ACACCCGTAG TGAACGTACT GAAGGCAGCG ATAATCGCGA AGAAAACCGT CGTAATCGTC GCCAGGCACA GCAGCAGACT GCCGAGACGC GTGAGAGCCG TCAGCAGGTT GAGGTAACGG AAAAAGCGCG TACCACCGAC GAGCAGCAAG CGCCGCGTCG TGAACGTAGC CGCCGCCGTA ATGATGATAA ACGTCAGGCG CAACAAGAAG CGAAGGCGCT GAATGTTGAA GAGCAATCTG TTCAGGAAAC CGAACAGGAA GAACGTGTAC GTCCGGTTCA GCCGCGTCGT AAACAGCGTC AGCTCAATCA GAAAGTGCGT TACGAGCAAA GCGTAGCCGA AGAAGCGGTA GTCGCACCGG TGGTTGAAGA AACTGTCGCT GCCGAACCAA TTGTTCAGGA AGCGCCAGCT CCACGCACAG AACTGGTGAA AGTCCCGCTG CCAGTCGTAG CGCAAACTGC ACCAGAACAG CAAGAAGAGA ACAATGCTGA TAACCGTGAC AACGGTGGCA TGCCGCGTCG TTCTCGCCGC TCGCCTCGTC ACCTGCGCGT AAGTGGTCAG CGTCGTCGTC GCTATCGTGA CGAGCGTTAT CCAACCCAGT CGCCAATGCC GTTGACCGTA GCGTGCGCGT CTCCGGAACT GGCCTCTGGC AAAGTCTGGA TCCGCTATCC AATTGTACGT CCGCAAGATG TACAGGTTGA AGAGCAGCGC GAACAGGAAG AAGTACATGT GCAGCCGATG GTGACTGAGG TCCCTGTCGC CGCCGCTATC GAACCGGTTG TTAGCGCGCC AGTTGTTGAA GAAGTGGCCG GTGTCGTAGA AGCCCCCGTT CAGGTTGCCG AACCGCAACC GGAAGTGGTT GAAACGACGC ATCCTGAAGT GATTGCTGCC GCGGTAACTG AACAGCCGCA GGTGATTACC GAGTCTGATG TTGCCGTAGC CCAGGAAGTT GCAGAACAAG CAGAACCGGT GGTTGAACCG CAGGAAGAGA CGGCAGATAT TGAAGAAGTT GTCGAAACTG CTGAGGTTGT AGTTGCTGAA CCTGAAGTTG TTGCTCAACC TGCCGCGCCA GTAGTCGCTG AAGTCGCAGC AGAAGTTGAA ACGGTAGCTG CGGTCGAACC TGAGGTCACC GTTGAGCATA ACCACGCTAC CGCGCCAATG ACGCGCGCTC CAGCACCGGA ATATGTTCCG GAGGCACCGC GTCACAGTGA CTGGCAGCGC CCTACTTTTG CCTTCGAAGG TAAAGGTGCC GCAGGTGGTC ATACGGCAAC ACATCATGCC TCTGCTGCTC CTGCGCGTCC GCAACCTGTT GAGTAA
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Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL QWDLSFRLKH WEAIKKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVLELA RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRSAVN AIETRQDGVR CVIVPNDQME TPHYHVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEFAE RKRPEQPALA TFAMPDVPPA PTPAEPAAPV VAPAPKSAPA TPAAPAQPGL LSRFFGALKA LFSGGEETKP SEQPTPKAEA KPERQQDRRK PRQNNRRDRN ERRDTRSERT EGSDNREENR RNRRQAQQQT AETRESRQQV EVTEKARTTD EQQAPRRERS RRRNDDKRQA QQEAKALNVE EQSVQETEQE ERVRPVQPRR KQRQLNQKVR YEQSVAEEAV VAPVVEETVA AEPIVQEAPA PRTELVKVPL PVVAQTAPEQ QEENNADNRD NGGMPRRSRR SPRHLRVSGQ RRRRYRDERY PTQSPMPLTV ACASPELASG KVWIRYPIVR PQDVQVEEQR EQEEVHVQPM VTEVPVAAAI EPVVSAPVVE EVAGVVEAPV QVAEPQPEVV ETTHPEVIAA AVTEQPQVIT ESDVAVAQEV AEQAEPVVEP QEETADIEEV VETAEVVVAE PEVVAQPAAP VVAEVAAEVE TVAAVEPEVT VEHNHATAPM TRAPAPEYVP EAPRHSDWQR PTFAFEGKGA AGGHTATHHA SAAPARPQPV E
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