Gene ECD_00946 details

Gene Information

• Locus tag: ECD_00946
• Symbol: ycbU
• ID: 0
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli BL21(DE3)
• Kingdom: Bacteria
• Replicon accession: CP001509
• Strand: +
• Start bp: 1007978
• End bp: 1008520
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 47%
• Product: predicted fimbrial-like adhesin protein
• Protein accession: ACT42841
• Protein GI: 253977171

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.118713
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA AAACGATATT TCAGTGCGTT ATCTTGTTCT TTAGCATTCT TAACATCCAT 
GTCGGGATGG CTGGGCCTGA ACAAGTTAGT ATGCATATTT ATGGGAATGT GGTCGATCAG 
GGCTGTGATG TCGCCACCAA AAGTGCATTA CAAAATATTC ATATTGGTGA TTTTAATATC 
AGTGATTTTC AGGCCGCGAA TACCGTAAGC ACTGCTGCTG ATTTGAATAT CGATATCACC 
GGTTGTGCCG CTGGTATTAC TGGCGCGGAC GTCCTTTTTA GCGGCGAGGC TGACACCCTT 
GCGCCGACAC TGCTCAAACT AACTGACACA GGCGGAAGCG GTGGTATGGC AACGGGGATT 
GCCGTGCAAA TTCTTGATGC GCAAAGTCAG CAAGAAATCC CGCTCAATCA GGTCCAGCCT 
CTTACGCCCT TAAAAGCCGG GGATAACACA CTCAAATATC AACTTCGTTA TAAGTCCACA 
AAGGCGGGAG CAACGGGCGG TAATGCGACG GCGGTTCTCT ATTTTGATCT GGTTTACCAG 
TGA 

 

Protein sequence

MKKKTIFQCV ILFFSILNIH VGMAGPEQVS MHIYGNVVDQ GCDVATKSAL QNIHIGDFNI 
SDFQAANTVS TAADLNIDIT GCAAGITGAD VLFSGEADTL APTLLKLTDT GGSGGMATGI 
AVQILDAQSQ QEIPLNQVQP LTPLKAGDNT LKYQLRYKST KAGATGGNAT AVLYFDLVYQ