Gene ANIA_06006 details

Gene Information

• Locus tag: ANIA_06006
• ID: 0
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Aspergillus nidulans FGSC A4
• Kingdom: Eukaryota
• Replicon accession: BN001301
• Strand: +
• Start bp: 1528952
• End bp: 1532536
• Gene Length: 3585 bp
• Protein Length: 1048 aa
• GC content: 51%
• Product: nonsense-mediated mRNA decay protein (Nmd5), putative (AFU_orthologue; AFUA_2G10010)
• Protein accession: CBF70375
• Protein GI: 259479811

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 42
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGATGTTG CAGCCCTGCG GAACCGCATC CAGTCCACGC TAGATGCCAA TGCTGATATC 
AGACGGCAGG CGGAACTTGA TCTGAAATAT GTTAGTCCTG GGCTACGGGC ATGCAGATGG 
TGGTTTTGCT AACCAAACCT CTTCCATTCC GCAGGCCGAG ACGCAACCGG GTTTCATAAA 
TGCTCTGTTG GATATTCTGC AGGGGGAGCA GGTCAACGCC GTCCAACTGT CGGGTACGTT 
TTGTCGACTC CTCATCTCCT TGCTGATGTT GAATCGGAGC CCATCGGCCC TGTGAAATTA 
TCCGCCAGAC CCGTGCCTTG AACCGCCTTT ACTGACTGGA AGGGATCGAT AGCGGGTGTT 
TACCTGAAGA ACCGTATCAA CCGAGGGTGG TCAACTATTG AGGATAGTCC GTTGCGCGCA 
CCTATTGCAG AGGAGGAGAA ACCAGGTTTC CGCGAGCGGC TGATTCCCGC CTTGGTTTCC 
ACCCCCCCCA ACGTCCGCGC TCAGCTCGTT CCTCTACTTC AGAAGATTCT TCAACATGAC 
TTCCCCGAAC AATGGCCTGG GTTCCTGGAC ATCACAATGC AGCTGCTCGG CACTAACGAT 
GCCGGTTCGG TCTATGCGGG TCTGCAGTGC CTGTTAGCCA TCTGCCGTGT GTACCGATTT 
AAAGCGGGGG ATAAACGGGA GGAGTTTGAC AAGATTATTG AGCACTCATT CCCTCAGTTG 
CTCAGCATAG GATCGAGGCT CGTGGATGAG GAGAGTGTAG AGGCGGCCGA GATGCTCCGC 
ATCGTGGTGA AATCATACAA GCATGCTATT TACGTGGGTG ATGCAGGAAG CCAAGAAGCA 
TATGGGTGGT TAGAACTGAC GGGTGAATAG TTCGAGCTCT CACCTCATCT TCAATCGCAC 
CAGGCGACAG TCGACTGGTG CACTTTGTTC CTACGGATCA TTGCCAAAGA ACCTCCGGCA 
AATTCTATGA TGGAATCCAA GGAGGAGAGA GAACTTGCCC ATTGGTGGAA GTGCAAGAAA 
TGGGCATATG CCAATCTGAA CCGTCTATTC ATCAGGTGCG TAGGCCTTTC GCATCAGTGG 
TGCTTCTCAC CTAACATGGA TGTTTAGATA CGGAAACCCC ACGACCATTC CCAAGTCCAG 
TACCCCGGAC TACTCTCAGT TTGCCAAGTC GTTCATTACA ACATTCGCCC CGGAAATTCT 
TAAGGGGTAC CTACAGGAGA TTGACAAATA CGTTTCCAAG GGTCAATGGC TGAGCAACCC 
AGCACTTTCC TACACTTTGA TCTTTTTCGA AGAGTGCGTC AAGCCGAAGT CAATGTGGGA 
TCACCTAAAG CCGCACATGG AGAACCTCAT TGCTCACTTC GTCTTCCCGA TTCTGTGCCA 
GAGTGACGAG GACATCGAGT TGTTCGAGAC GGACCCGTCT GAATATCTCC ACCGAAAGTT 
GAACTACTAC GAGGAGGTCT CGGCGCCCGA TGTTGCTGCT ACAAACTTCC TGATTACTCT 
CACCAAGAAC CGGAAGAAGC AGACTTTCTC TATCCTTACA TTCGTCAACG GTATTGTTAG 
TAAGTATGAG GCTGCTCCGG ATGACCAGAA ATTGCCAAGG GAGAAGGAGG GCGCCCTGCG 
CATGATTGGA TCTCTGGCTT CTGTCATTCT GGGGAAGAAG AGCCCCATCG CGGACCAGGT 
TGAATACTTT TTCGTACGCC ATGTTTTCCC TGAGTTCCGC AGTCCCCATG GTTTCCTTCG 
TGCGCGTGCC TGTGACACGT TGGAGAAATT TGAGCAGCTC GATTTCCAGG ACCCCAACAA 
TCTGATGATC ATTTACCGGA ATATCCTCGA ATCCATGACT GATTCAGAAC TGCCTGTTCG 
TGTCGAGGCC GCCCTTGCTC TTCAGCCTCT CATTCGTCAC GACGTGATCC GCACCTCTAT 
GCAGCAGAAT ATCCCGCAGA TCATGCAGCA ACTTCTCAAG CTTGCCAATG AGGTTGATGT 
TGATGCTTTG GCTAATGTTA TGGAAGATTT CGTCGAGGTT TTCTCTGCGG AGCTGACTCC 
TTTCGCCGTT GCTCTGAGTG AGCAGTTGCG TGACACATAC ATGCGTATCG TTGGTGAGCT 
CCTGGAGAGA AACGCAGCCA AGGGCGAGGA GGACACGTAC GGCGATTTCC TGGACGACAA 
GAGTATCACC GCTCTTGGTG TTTTGCAGAC AATTGGCACA TTGATTCTTA CTCTAGAGAG 
CACGCCCGAC GTGCTTTTGC ACCTCGAAAC AGTCCTTATG CCTGTCATTA GCATCACCCT 
TGAGAACAAG CTTTACGACC TCTACAATGA AGTATTTGAG ATCATCGACA GCTGCACATT 
CGCCTCGAAG TCTATTTCTC CGACCATGTG GCAGGCTTTT GAGCTCATCC ACAAGACCTT 
CAAGGCGGGA GCTGAGCTGT ACCTGGAGGA CATGCTGCCC GCGCTCGACA ACTACGTGGC 
GTACGGTTCT CAGACGCTTG TTCAAAATCC TGCCTACCTC GCAGCCATCG TGGGTATGGT 
CGAAGATATT TTCAATGATG AGAAAGTGGG CGGCGTAGAC AGGATCTGTG GTTGCAAGCT 
TGCCGAGACT GTCATGCTAA ACCTGCGCGG CTATGTTGAC CAATACATCC CTGTCTTTAT 
CGAGCTTGCG ATGCGTGTCA TCGATGCTGG AGAAGCGCGT ACCAAATCTT ACCGTCTCCA 
TCTGATGGAG ATGGTCATCA ACGCCATATA TTACAACCCA GTTCTCAGTC TCCAAGTCCT 
AGAGGCCAAG GGGTGGACCA ACAAGTTCTT CAGCGCCTGG TTCTCTAGCA TTGACAGCTT 
CAGACGTGTT CACGACAAGA CACTGTCCAT TGTCGCCATC ACCTCGCTGC TCACTTTGAA 
CCCTGCCGAC GTGCCAACTA GCGTTCAACA AGGTTGGCCA AGGTTGCTTC AGGGAGTTAC 
CAGACTGTTC CACACATTGC CCGCCGCTAT TCAGAGTATG TATTTTCATC CAGCCCAAGC 
GACTTAGACT AACGTTACAC AGATCGACAA GAGGCGACAA AGGAGTCGGA CTTCCAATAC 
GAAGAGGAAG ACGAGGATGA TGAAGGTAAC GACTGGGAGG GCGAAGTGGA ATGGACTGAG 
GGTGATGATG AGGCTGGTCC CGAGGGCGAT ATTCCCGACG AGAGTGCTGC TTACCTGGAC 
TTCCTGAACA AAGAGGTGAG TGATGGCAGC ATGTGCTTTT CAGCTTGTGG CTAAATCATC 
ACCAGGCGGC AAAATTCGGC TCTTTCGCTG GGGACGACGA TGACGACGAG CTTGATGAGG 
AGAGTTTACT TGAGACTCCT CTCGACAAGG TTGAACCATA TGGGCTGTTC AAGCAGGTGT 
TCATGAGTAC GTGTTACTTT ATTCCTCTAA TAGGATTTAG CTAACTTGCA ACCAGACCTC 
CAACAACAAC AACCTCAGCT CTACGAAAAT CTGACGAATA TTCTAAACGA CGAAGAGAAG 
AAGATCATCG AGTCTGTGTT CCATGAAGCC GACGCAAAGG CTCTGGCCGC GGCCAATGAA 
GAAGCTGCCA AAGCGGCTGC CCTCCAAGCT AACGGGAATC AATAG 

 

Protein sequence

MDVAALRNRI QSTLDANADI RRQAELDLKY AETQPGFINA LLDILQGEQV NAVQLSAGVY 
LKNRINRGWS TIEDSPLRAP IAEEEKPGFR ERLIPALVST PPNVRAQLVP LLQKILQHDF 
PEQWPGFLDI TMQLLGTNDA GSVYAGLQCL LAICRVYRFK AGDKREEFDK IIEHSFPQLL 
SIGSRLVDEE SVEAAEMLRI VVKSYKHAIY FELSPHLQSH QATVDWCTLF LRIIAKEPPA 
NSMMESKEER ELAHWWKCKK WAYANLNRLF IRYGNPTTIP KSSTPDYSQF AKSFITTFAP 
EILKGYLQEI DKYVSKGQWL SNPALSYTLI FFEECVKPKS MWDHLKPHME NLIAHFVFPI 
LCQSDEDIEL FETDPSEYLH RKLNYYEEVS APDVAATNFL ITLTKNRKKQ TFSILTFVNG 
IVSKYEAAPD DQKLPREKEG ALRMIGSLAS VILGKKSPIA DQVEYFFVRH VFPEFRSPHG 
FLRARACDTL EKFEQLDFQD PNNLMIIYRN ILESMTDSEL PVRVEAALAL QPLIRHDVIR 
TSMQQNIPQI MQQLLKLANE VDVDALANVM EDFVEVFSAE LTPFAVALSE QLRDTYMRIV 
GELLERNAAK GEEDTYGDFL DDKSITALGV LQTIGTLILT LESTPDVLLH LETVLMPVIS 
ITLENKLYDL YNEVFEIIDS CTFASKSISP TMWQAFELIH KTFKAGAELY LEDMLPALDN 
YVAYGSQTLV QNPAYLAAIV GMVEDIFNDE KVGGVDRICG CKLAETVMLN LRGYVDQYIP 
VFIELAMRVI DAGEARTKSY RLHLMEMVIN AIYYNPVLSL QVLEAKGWTN KFFSAWFSSI 
DSFRRVHDKT LSIVAITSLL TLNPADVPTS VQQGWPRLLQ GVTRLFHTLP AAIQNRQEAT 
KESDFQYEEE DEDDEGNDWE GEVEWTEGDD EAGPEGDIPD ESAAYLDFLN KEAAKFGSFA 
GDDDDDELDE ESLLETPLDK VEPYGLFKQV FMNLQQQQPQ LYENLTNILN DEEKKIIESV 
FHEADAKALA AANEEAAKAA ALQANGNQ