| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_A0054 |
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| Symbol | |
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| ID | 5384086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009704 |
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| Strand | + |
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| Start bp | 12438 |
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| End bp | 13817 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640857060 |
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| Product | conjugal transfer protein TrbI |
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| Protein accession | YP_001393249 |
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| Protein GI | 153930612 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 57 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAATA CCGATAATCA AATGTCTCCA TCCAACTCTC CTGGTTCAAT AGGAAAAACG
GGTGTTCGTC GAGTGAATAA TCTTCCACTA ATTATTGTTC TCTCTGTGAT AACAATATTT
ATCGCTATTA TTGCTATGGT TGCAGTAAAA AGGTCTGACC AACAAAATCA AGCCCCTGAA
ACCCCAAAAT CAGAAAAAAC AGTTAGCAGC TCTTCAATGG CCGCAGATAT TGTCGCTGGC
CATAATAACG GTATTATCCC ACCAGAACAG ATTACCGCCC CAACTCAAGC ATCAGAACCA
ACTGAGCCAA CAGAACCAAC AACAGCGATT CCAGTTGCAA AAGTTGATAA CCCAAATGAA
CCACCAGTAC CTCCTCGTAA TAACGGGAGC CGCCAAGATA TACCTAACGA TCCCGATTTA
GACCGTATAA AAATGGCAAA GCTGCAACAA TTTGAAGAAG CAGTTAAAGC TAAGACAACT
GTTTCTATTC CAACACTTCG CGATAATGCA ACCGGCGCAG ATGGGGCAAC ACCGACAAGA
GATCAAACCT TGGCGCGCTT AGAAGCTGTT CGGCGTCAAA TTGATCAAAC ACAAAATGAA
GACCCAACTT CGGCCTACAA AAAACGCTTA CAGCAATTGC AAGGTAATGG CGGGATGAGC
GGAGATAACG CGAGTTCTGG CGGTGATGGC CTTGCTACAT CCAGTAGCAA CGATATTGAA
CAATTTGCCG GTACTGGCGT AACAGACCGT TGGGCATTGA ATACAAAAGT TGAAGCTCCT
CGTTCACCAT TTGAAATTAG AGCTGGTGCG GTTGTTCCTG GCGTAATGAT CAGTGGCGTT
AATTCTGATT TGCCTGGTCA AATAATGGGC CAAGTGACAC AAGATGTATT TGATACTCCA
ACGGGCAAAC ATCTATTAAT TCCTCAAGGA ACTCGGCTGA CTGGCTCATA CACAAGTGAT
GTCGCTTTTG GTCAGTCAGC AGTAATGATT GCTTGGCAAC GTATGATTTT CCCTGATGGA
AAGGCGCTAG ATATTGCAGC AATGCCCGGA GCTGATAGTG CCGGTTATTC CGGCTTCCGA
GATCAAGTTA ATAATCATTT ATTCCGGATA TTTTCCTCAG CATTCCTACT CTCTGGCGTT
ACTGCGGGGG TGACGTATAG CCAAGGGAGA AATGAGAACA GCAATGGGAA TAATAGCCCT
ACCGCAAGCA GCGCATTAAG TGAAGCGTTA GGTCAACAGT TTGGCCAAGT CACCGCCCAA
ATGATTGCCA AGAATTTAAA CATTGCACCA ACTTTAGAAA TTCGTCCTGG TTATCGCTTC
AATATTATTG TCATTAAAGA TATGACATTT AAAAAGCCTT ATAAGCCATT TGATTACTAA
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| Protein sequence | MANTDNQMSP SNSPGSIGKT GVRRVNNLPL IIVLSVITIF IAIIAMVAVK RSDQQNQAPE
TPKSEKTVSS SSMAADIVAG HNNGIIPPEQ ITAPTQASEP TEPTEPTTAI PVAKVDNPNE
PPVPPRNNGS RQDIPNDPDL DRIKMAKLQQ FEEAVKAKTT VSIPTLRDNA TGADGATPTR
DQTLARLEAV RRQIDQTQNE DPTSAYKKRL QQLQGNGGMS GDNASSGGDG LATSSSNDIE
QFAGTGVTDR WALNTKVEAP RSPFEIRAGA VVPGVMISGV NSDLPGQIMG QVTQDVFDTP
TGKHLLIPQG TRLTGSYTSD VAFGQSAVMI AWQRMIFPDG KALDIAAMPG ADSAGYSGFR
DQVNNHLFRI FSSAFLLSGV TAGVTYSQGR NENSNGNNSP TASSALSEAL GQQFGQVTAQ
MIAKNLNIAP TLEIRPGYRF NIIVIKDMTF KKPYKPFDY
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