Gene YpsIP31758_A0005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_A0005 
Symbol 
ID5384122 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009704 
Strand
Start bp28986 
End bp29492 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content37% 
IMG OID640857077 
Producttransglycosylase SLT domain-containing protein 
Protein accessionYP_001393266 
Protein GI153930583 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones67 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGATA TAGCTCAGGG ATTTATATTG ATACTAACGT TATTAGTGCC ACTAAGTAGT 
TATGCATATT GCTTTCAAGC AGCTGGTGAC ACTTATCAAA TAGACCCTTT ATTGCTTATA
TCTATCGCTG ATGTAGAAAG TAGTATGAAT TATAAAGCTA TCGGGCAAAA TAAAAAGAAT
GGCGTAGTGA AGTCAGAAGA CCTTGGGCTA ATGCAGATAA ATACATCTTG GCTACCAAAG
CTAGGGAAAT CATTCGGTAT TACTCGTGAG CATCTATTAA ATAACCCCTG TCAGAATGTT
TATGTCGGGG CTTATGTTTT AGCAAATAAC ATATCTAGCA ATGGTGTTAA TTGGGAGTCA
ATTGGTGCTT ATAACGCCGG TTTTAAAAGC GCGAATGAAG AGTTTAGGCT TAGGTATGCT
AAAAAAGTAT ACAGTAAATA CATAAATTTA TTGCGTGGCA ATAGAGCGAT AATTATTGCC
AAGGCAAGTC GAGGCGAACG GGTATAA
 
Protein sequence
MKDIAQGFIL ILTLLVPLSS YAYCFQAAGD TYQIDPLLLI SIADVESSMN YKAIGQNKKN 
GVVKSEDLGL MQINTSWLPK LGKSFGITRE HLLNNPCQNV YVGAYVLANN ISSNGVNWES
IGAYNAGFKS ANEEFRLRYA KKVYSKYINL LRGNRAIIIA KASRGERV