Gene YpsIP31758_4078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_4078 
SymboluhpC 
ID5385154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp4597810 
End bp4599141 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content47% 
IMG OID640867107 
Productregulatory protein UhpC 
Protein accessionYP_001403022 
Protein GI153949496 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00881] phosphoglycerate transporter family protein 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGTTTT TCCTCAAAAG TCGCGATAAC GTACCGCCAG TAACGGATCA AACACAAATT 
GATTCATCCT ATAAGTATTG GCGTATCCAA TTAATGTGGA CGATGTATAT CGGCTACGCT
GCGTTTTATT TCACTCGTAA AAGTTTCAAT TTTATTATGC CTGCTATGCT CACGGACCTA
GGGCTGAGCA TGTCTGATGT CGGGATTTTA GGCACGCTGT TTTACATCAC TTACGGCTGC
TCTAAATTTG TCTCTGGGAT GATCAGCGAT CGCTCAAATC CGCGTTATTT TATGGGGATC
GGGTTGGTCA TGACGGGGAT TATTAATATC CTGTTTGGCA TGAGCTCATC ACTTTTGGTC
CTTGGCGCCT TGTGGATCCT CAATGCGTTC TTCCAAGGTT GGGGCTGGCC ACCATGTTCT
AAAATATTGA CCAGTTGGTA CTCGCGTTCT GAACGTGGTG GCTGGTGGGC TATTTGGAAC
ACCTCACATA ACTTTGGCGG GGCGCTGATC CCCTTGCTCG TCGGGGTGAT TACTCTGCAC
TTTAGCTGGC GCTACGGGAT GATCATCCCC GGTATTATAG GTGTGGTGAT TGGTTTGCTG
ATGTGTTGGC GTCTGCGAGA TAAGCCAAGC ACCATGGGCC TACCAAGTGT GGGTAAATGG
CGCAATGATG CGATGGAGCT GATCCAGGAA TCCGAAGGCC AGGGGCTGTC TAATAAAGAA
ATTGTGAAGC GTTATGTCTT AACCAATAAA TATATTTGGT TGTTAGCCGT TTCCTATGTG
CTGGTTTATA TCGTTCGAAC CGCGATTAAT GACTGGGGTA ACCTCTATCT GACCCAAGAG
AAAGGCTATT CGTTGCTGAC CGCTAACTCT GCAATTTCAT TATTTGAAGT GGGTGGATTT
ATTGGTTCAT TGGTCGCAGG TTGGGGTTCT GATAAGTGGT TCCGTGGCAA TCGTGGGCCG
ATGAACCTGA TTTTTGCTAT TGGTATCTTC CTCTCAGTTG CATCACTGTG GACGTTGCCA
AGCATCAGTT TTGTTTTACA GGCAGGCTGC TTCTTTGCGA TTGGTTTCTT TATTTTCGGG
CCACAAATGC TGATTGGTAT GGCTGCTGCT GAGTGCTCTC ATAAGGATGC CGCTGGCGCT
GCAACCGGCT TTGTTGGGCT GTTTGCCTAT TTAGGGGCGG CTTTATCGGG TTACCCTATC
GCTCGCATCA TGGAAATCTG GCATTGGAAT GGTTTCTTTG TGGTTATCTC TGTAGCGGCA
TGTTTATCTG CTTTCTTCTT ATTGCCATTC CTGCGAGCGC AATCGCCGCA GTTAAAGCAA
GCGACAACCT GA
 
Protein sequence
MWFFLKSRDN VPPVTDQTQI DSSYKYWRIQ LMWTMYIGYA AFYFTRKSFN FIMPAMLTDL 
GLSMSDVGIL GTLFYITYGC SKFVSGMISD RSNPRYFMGI GLVMTGIINI LFGMSSSLLV
LGALWILNAF FQGWGWPPCS KILTSWYSRS ERGGWWAIWN TSHNFGGALI PLLVGVITLH
FSWRYGMIIP GIIGVVIGLL MCWRLRDKPS TMGLPSVGKW RNDAMELIQE SEGQGLSNKE
IVKRYVLTNK YIWLLAVSYV LVYIVRTAIN DWGNLYLTQE KGYSLLTANS AISLFEVGGF
IGSLVAGWGS DKWFRGNRGP MNLIFAIGIF LSVASLWTLP SISFVLQAGC FFAIGFFIFG
PQMLIGMAAA ECSHKDAAGA ATGFVGLFAY LGAALSGYPI ARIMEIWHWN GFFVVISVAA
CLSAFFLLPF LRAQSPQLKQ ATT