| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3967 |
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| Symbol | hofQ |
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| ID | 5386365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4449429 |
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| End bp | 4450805 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640866998 |
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| Product | putative outer membrane porin HofQ |
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| Protein accession | YP_001402915 |
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| Protein GI | 153947341 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000000000171425 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCATCAC ACAGCCGCTC CTCCAATAGC CATTTATCAG ACAGCAAGTT ATCAAACAGT
GCTTCATCAA ATAGTGCTTC ATCAAATAGC ACTTCATCAA ATAGCACTTC ATCAAACAGT
GTCTTATCAA ATAATGTCTC ATCAAGTAAT ATCTCACCAA ATAATGCCTC ATCCAGTAAT
GCCTCATTAC CGCGTACCCG CAGCGGGGGG CCAGTCACCC TGGAATTTCA GGATGCGCCG
GTCTCCGTCA TCTTGCAGGC TCTGGCTGAC TATCGGCAAC TTAATCTGAT CACGACTACC
GGTGTGGGCG GCAATCTCAG TTTGCGGTTG ATTGAAGTGC CTTGGGAGCA GGCATTGGCG
ATCATTCTGC GGATGGGGCG TTTGAAAGCT GAGCGCGAGG GGACCGTGAT GATGGTCTTT
ACCGAACAGG AAATTCAAGA AAGGCAGCAG CGGACGAAAC AGCAAGCTGC GCCAGAAGCA
CTGGCTAACC TGACATTGGC ATTGCAATAC GCGAATGCTG AACAGGTGGC TGACAGTTTG
GATCCGCTGC AAGGTGGGCT GCTTTCTCCA TTGGGCAGTG TGGTGGCCGA TAAGCGGACG
AACACATTAT TGATTCGCGA TACGCCCGCT TCACTGGCAT TGTTAAAAAA CTGGCTGATT
GAGATGGATT TACCGTTACA ACAAGTACAG TTATCCGCGC ATATTGTGAC CATCAGCAGT
GAAGATTTAC AAGAGCTGGG TGTGCGCTGG GGGATGGGGG AGGGCAAGGG AAACACCGCG
CTCAGAATCA ATGATTTTAA TGTCAATTTG CCGTTGCCAA ATAGCGCCGC GAGCGTGGGG
TTTCATGTGG CCCGTATTGG TGGCCGCCTG CTGGAGCTTG AGTTGAGTGC GTTGGAGCAA
GAGAACCAGG TCGATATTAT TGCCAGCCCA CGCTTAATTA CCTCACATCA ACAAACCGCC
AGTATTAAAC AAGGTTCTGA TATTCCTTAT ACTGTCTCAC GGGGTAAAAA AGAGGCAGCG
GCCATTGAGT TCAAAGAAGC GGTGTTGGGG ATGGAGGTCA CACCCAAAAT TCTACGTAAT
GGCAAAATCA TCCTAGACCT AAAAATTAGT CAAAATATGC CCGGTATCAC TATTAAACGC
GGTGAGAGTG AAATGTTGCT AATAGATAAA CAAGAAATTA AAACACAAGT TACTGTAAAC
GATGGCGAAA CCATCGTGCT GGGCGGGATT TTCCAACAAA AAAAACGCCA GAGTGTTAAT
AAAGTCCCGT TACTGGCCGA TATTCCACTA TTAGGCGCGA TGTTCAGGCA AGATACTCAA
CAGCAAAGTC GGCGGGAGTT AGTGATTTTC ATTACGCCAA AATTAATCAG TGCCTGA
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| Protein sequence | MPSHSRSSNS HLSDSKLSNS ASSNSASSNS TSSNSTSSNS VLSNNVSSSN ISPNNASSSN
ASLPRTRSGG PVTLEFQDAP VSVILQALAD YRQLNLITTT GVGGNLSLRL IEVPWEQALA
IILRMGRLKA EREGTVMMVF TEQEIQERQQ RTKQQAAPEA LANLTLALQY ANAEQVADSL
DPLQGGLLSP LGSVVADKRT NTLLIRDTPA SLALLKNWLI EMDLPLQQVQ LSAHIVTISS
EDLQELGVRW GMGEGKGNTA LRINDFNVNL PLPNSAASVG FHVARIGGRL LELELSALEQ
ENQVDIIASP RLITSHQQTA SIKQGSDIPY TVSRGKKEAA AIEFKEAVLG MEVTPKILRN
GKIILDLKIS QNMPGITIKR GESEMLLIDK QEIKTQVTVN DGETIVLGGI FQQKKRQSVN
KVPLLADIPL LGAMFRQDTQ QQSRRELVIF ITPKLISA
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