Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3812 |
Symbol | epaR |
ID | 5385942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 4297732 |
End bp | 4298526 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640866836 |
Product | type III secretion apparatus protein SpaR/YscT/HrcT |
Protein accession | YP_001402766 |
Protein GI | 153948893 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4791] Type III secretory pathway, component EscT |
TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
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Plasmid Coverage information |
Num covering plasmid clones | 58 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGACG TCCTCCCCGG TCTGACCGCA CTCGCATTAG CCATGATGCG GCCCTACGGT ATCTTACTGA TATTACCGCT GTTTACCGCC CGCAGTTTGG GGAGCAGCTT ATTGCGTAAT GGCTTGATTG TTGCCATCGC GCTGCCGGTC ACGCCGCTAT TTTTATCCGC ACCCATCATC ACCAATAGTA GCCCGGTCAC CTGGATTGGG GTGTTATGCA CGGAGCTACT CATTGGGGTG GTGATGGGGT TTGTCGCCGC ATTGCCTTTC TGGGCTATGA ATATGGCCGG TTTTCTGATC GATACCTTAC GCGGGGCAAC GATGTCCACG TTGTTTAACC CCGGTATGGG CGTCGAATCC TCCCTTTTTG GTGTGCTGTT TACCCAAATA TTAACGGTAC TGTTCCTGAT TTCTGGCGGT TTTAATCAGG TGTTGGCGGC GTTGTACGGC TCGTACGATA GCTTACCCAT CGGCCAGGGT ATCCAGCCTG CTGCAGATCT ATTGCTCTTT CTGCAAACTG AGTGGCAGAT GATGTTCGAG CTTTGCTTGT GCTTTGCCCT ACCAGCACTG CTGGTCATGG TGTTGGCTGA TCTCTCTTTA GGATTAATTA ACCGCTCGGC CCGGCAACTG AATGTCTTTT TTCTGGCGAT GCCCATTAAA AGCGCACTGG CACTTTTTCT CTTACTGATC AGCCTGCCTT ATGGCCTGCA TCACTACCTG TCCCGTATGA GCGATACTGA ACAGAAGATT GGTACGTTGA TCCCGTTGAT CAAAGGGGGG AATGATGTCC ACTGA
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Protein sequence | MTDVLPGLTA LALAMMRPYG ILLILPLFTA RSLGSSLLRN GLIVAIALPV TPLFLSAPII TNSSPVTWIG VLCTELLIGV VMGFVAALPF WAMNMAGFLI DTLRGATMST LFNPGMGVES SLFGVLFTQI LTVLFLISGG FNQVLAALYG SYDSLPIGQG IQPAADLLLF LQTEWQMMFE LCLCFALPAL LVMVLADLSL GLINRSARQL NVFFLAMPIK SALALFLLLI SLPYGLHHYL SRMSDTEQKI GTLIPLIKGG NDVH
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