Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3459 |
Symbol | lspA |
ID | 5387317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3897465 |
End bp | 3897974 |
Gene Length | 510 bp |
Protein Length | 169 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640866472 |
Product | lipoprotein signal peptidase |
Protein accession | YP_001402414 |
Protein GI | 153947776 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0597] Lipoprotein signal peptidase |
TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.0475821 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAC CTATTTGCTC GACCGGATTG CGCTGGTTAT GGCTGGCAGT TGTCGTTGTC ATCTTGGATA TCAGCAGCAA GCAGTGGGTC ATGGCCCACT TTGCTCTGTA TGAATCGGTG CCACTGATTC CTTTTTTCAA CCTAACCTAT GCGCAGAATT TTGGCGCAGC ATTTAGCTTC TTGGCGGATA AAAGTGGTTG GCAGCGTTGG TTCTTTGCCG GTATTGCGAT AGGCATCTCC GTCGTATTAA TGGTGATGAT GTATCGCTCA ACAGCAAAGC AACGCCTGAT AAATTGTGCT TATGCATTAA TTATCGGTGG TGCACTCGGG AATTTATATG ACCGTTTAGT GCATGGCGCA GTCAACGATT TTCTCGATTT TTACATCAAT AACTGGCATT TCCCGACGTT CAATTTGGCC GATGTGGCGA TATCCATTGG TGCTGTATTG GTTATCTTTG AAGGCTTCTT AAGTCCGGCA GAAAAAAACG CGGTGAATAA AAATGAGTGA
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Protein sequence | MNKPICSTGL RWLWLAVVVV ILDISSKQWV MAHFALYESV PLIPFFNLTY AQNFGAAFSF LADKSGWQRW FFAGIAIGIS VVLMVMMYRS TAKQRLINCA YALIIGGALG NLYDRLVHGA VNDFLDFYIN NWHFPTFNLA DVAISIGAVL VIFEGFLSPA EKNAVNKNE
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