| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3435 |
|---|
| Symbol | |
|---|
| ID | 5385273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 3871153 |
|---|
| End bp | 3872655 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640866448 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001402390 |
|---|
| Protein GI | 153949071 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.333697 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAG CCCAACTCAA TGACACGCCA GACATCAACG TCGATCTGGC TGAAAACGAG
TTAGATGACA TTTTAAAACG TTCTTTTCGC CCTCGAACTG ACGAAGCTTC CGCCACAGTG
CGCCGTGCCA TAGGCACGCT TGCTGCGTAT GCCAATAAAG GCCAAGTGAA AGTCAATCGT
GATGTCGTAC TGACCATTGA GTCTTTAGTC GCTGAAATTG ACGAAAAACT TTCCGATCAA
ATGAACCTTA TTCTGCACCA TAAAGAGTTC CAAAAGCTGG AATCAGCTTG GCGCGGGCTT
AGCTATCTTG TTGATAATAC AGATGCTAAT GAAACTTTAA AAATACGGGT ACTGAACATT
AGCCAAGATG AACTGGGGAA AACGCTTCGC CGTTATCGTG GCTCTGCATG GGATCAAAGT
CCGATATTTA AACAGGTCTA TGAACATGAA TATGGGCAGT TTGGTGGGGA ACCTTTTGGT
TGCATGATCG GTGATTATGA ATTCGATCAC AGTCCACAGA GTGTGGCTCT GCTGACCGAG
TTAGCCAAGG TGGCCGCCGC CGCTCACTGT CCTTTCATTA CCTCTTCTTC CCCAAGCATC
ATGCAGATGA ATAACTGGAG GGAGCTGGGT AACCCAAGGG ATATCGGCAA AATTTTTACC
ACACCTGAAT ATGCGCCATG GAGACGTTTA CGTGAGAGTA ATGACTCCCG CTATCTGGTA
CTGACTCTGC CACGTTTTCT TTCGCGTCTG CCGTATGGTG CCAAAAATCA TCCTATTGAT
GATTTTGCTT TTGAAGAAGT GGTTAGCCCT CATGCCAGTG AGGATTTCAC TTGGGCGAAT
GCGGCCTATG CCATGGGCGT CAATATTAAC CGGGCCTTCA ATGAATATGG TTGGTGTTCA
AGGATCCGCG GTATTGAGTC GGGGGGGTCC GTAGAAGAAC TTCCGGCCTA TGCTTTTCCT
TCTGACGAAG GCGGATATGA ACTCACTTGT CCGACAGAAT TGGCAATTTC GGACCGTCGT
GAGAACGAGC TATCCAATGC TGGTTTTTTA CCGCTGGTCT ACCGTAAGAA CTCAGACTTT
GCCGCCTTTA TCGGGTCGTG CACCCTGCAT GCACCGGCAA ACTATGATGA CCCCGATGCG
ACGGCGAACG CCAGATTATC GGCCCGTTTA CCTTACATTT TTGCCACCTG TCGTTTCGCC
CATTACCTCA AATGTATTGT GCGCGACAAA ATTGGTTCGT TCCGCTCGCG GGATGACATG
CAACTTTGGC TTAACGACTG GGTGATGAAC TACGTCGATG GTGACCCCTC CATTTCAACA
GAAGCCACTA AAGCTAAACG CCCGCTGGCC GCTGCGGAAG TTCAAGTTGA AGACGTAGAG
GATGATCCTG GTTTTTACCG CGCTCACTTC TATTTACGCC CTCACTACCA ACTTGAAGGT
ATGACGGTTT CTCTGCGGCT GGTTTCTAAA CTTCCATCCA ACAAGGAAAG CGAAAAGAAA
TAA
|
|---|
| Protein sequence | MQKAQLNDTP DINVDLAENE LDDILKRSFR PRTDEASATV RRAIGTLAAY ANKGQVKVNR
DVVLTIESLV AEIDEKLSDQ MNLILHHKEF QKLESAWRGL SYLVDNTDAN ETLKIRVLNI
SQDELGKTLR RYRGSAWDQS PIFKQVYEHE YGQFGGEPFG CMIGDYEFDH SPQSVALLTE
LAKVAAAAHC PFITSSSPSI MQMNNWRELG NPRDIGKIFT TPEYAPWRRL RESNDSRYLV
LTLPRFLSRL PYGAKNHPID DFAFEEVVSP HASEDFTWAN AAYAMGVNIN RAFNEYGWCS
RIRGIESGGS VEELPAYAFP SDEGGYELTC PTELAISDRR ENELSNAGFL PLVYRKNSDF
AAFIGSCTLH APANYDDPDA TANARLSARL PYIFATCRFA HYLKCIVRDK IGSFRSRDDM
QLWLNDWVMN YVDGDPSIST EATKAKRPLA AAEVQVEDVE DDPGFYRAHF YLRPHYQLEG
MTVSLRLVSK LPSNKESEKK
|
|---|
| |