Gene YpsIP31758_3370 details

Gene Information

• Locus tag: YpsIP31758_3370
• Symbol: pilA
• ID: 5385191
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 3789109
• End bp: 3789573
• Gene Length: 465 bp
• Protein Length: 154 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640866385
• Product: putative major pilin subunit
• Protein accession: YP_001402327
• Protein GI: 153948359
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4969] Tfp pilus assembly protein, major pilin PilA
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 42
• Plasmid unclonability p-value: 0.981789
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAC ATCAGGGTTT AACATTACAG AAAGGTTTTA CATTAATTGA ATTGATGGTT 
GCGGTTGCTA TCATTGCAGT CCTCAGTGGT ATTGGCATTC CCTCATATCA ACGTTATATC 
CAAAAAGCAG CACTCACCGA CATGCTACAG GCCATCGTCC CCTACAAGAT GGCGGTAGAA 
CTTTGTGCTC TTGAGCAATC CAACCTTGAT AGCTGCAACG CTGGCAGTAA TGGGATCCCC 
GCAGGGCAAG TATCGCGTTA TATCAATGCA ATAAATATTG CCAAAGGTGT TATTACATTA 
AGTGGCCAGC ATACGCTTAC TGGCCTGACA TTGGCGATAT CACCAACCCG AAACAGCAAC 
GGAAATTTAG TCTGGGCCAG AACATGTACG GCAACAGATA GTGCCATGAC TGATAGTTGT 
AAAGCGGTAT TCCGTTTCAA TGATAAGGCC CCATCAAATG GCTGA 

 

Protein sequence

MAKHQGLTLQ KGFTLIELMV AVAIIAVLSG IGIPSYQRYI QKAALTDMLQ AIVPYKMAVE 
LCALEQSNLD SCNAGSNGIP AGQVSRYINA INIAKGVITL SGQHTLTGLT LAISPTRNSN 
GNLVWARTCT ATDSAMTDSC KAVFRFNDKA PSNG