Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3368 |
Symbol | ampD |
ID | 5387139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3787334 |
End bp | 3787885 |
Gene Length | 552 bp |
Protein Length | 183 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640866383 |
Product | N-acetyl-anhydromuranmyl-L-alanine amidase |
Protein accession | YP_001402325 |
Protein GI | 153950184 |
COG category | [V] Defense mechanisms |
COG ID | [COG3023] Negative regulator of beta-lactamase expression |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 0.559368 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCTGG AAAACGGCTG GATTGTCGGG GTTAAACAGG TGCTGTCCCC CCATTTTGAT CTGAGGCCAG AGGGTGAAAT GCCCTCTCTG CTGGTGATTC ATAGTATCAG TCTACCGCCC AGTGAGTTTG GTGGCCCCTA TATCGATCAG CTCTTCACCG GGACACTCAA TGCCGATGAG CATCCCTATT TTGCTAGTAT TGTACATTTA CGCGTCTCGG CCCATTGCTT GATTCGCCGT GATGGTGAAA TCATTCAGTA TGTTCCGTTC GATAAACGGG CTTGGCATGC AGGTGTTTCC GTATTTGCTG GGCGTGAGCG ATGTAACGAT TTTTCTATTG GGATCGAGCT GGAAGGGACA GATGTGTTAC CGTTTACTCC CGTGCAATAT CAACGACTGA CTGAGATCAG TGCGGTTTTA TTTGCCCACT ATCCAATAAC GGTAGAGCGG GTGGCTGGTC ACAGTGAGAT CGCACCAGGG CGTAAAACAG ACCCAGGGCT GGCCTTTGAT TGGTTTTTTT ATCAACAAAA TTTAGCTAAG TTGCTTGTAT GA
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Protein sequence | MLLENGWIVG VKQVLSPHFD LRPEGEMPSL LVIHSISLPP SEFGGPYIDQ LFTGTLNADE HPYFASIVHL RVSAHCLIRR DGEIIQYVPF DKRAWHAGVS VFAGRERCND FSIGIELEGT DVLPFTPVQY QRLTEISAVL FAHYPITVER VAGHSEIAPG RKTDPGLAFD WFFYQQNLAK LLV
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