| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3364 |
|---|
| Symbol | pdhR |
|---|
| ID | 5385664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 3782750 |
|---|
| End bp | 3783514 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640866379 |
|---|
| Product | transcriptional regulator PdhR |
|---|
| Protein accession | YP_001402321 |
|---|
| Protein GI | 153948632 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.0485553 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTACA ACAAAATACG TCAACCCAAA CTATCAGATG TAATCGAGCA GCAGCTCGAA
TACTTGATCT TGGAAGGGAC GCTGCGTCCG GGTGAAAAGT TACTGCCTGA ACGTGAGTTG
GCGAAGCAAT TTGATGTTTC CCGACCTTCT TTGAGAGAAG CTATTCAGCG ATTAGAGGCT
AAAGGCTTGC TGTTGCGCCG TCAGGGAGGG GGTACCTTCG TTCAGACCAA TCTGTGGCAA
AGCTTTAGCG ATCCGTTAGC TGAACTGCTG GCAGACCATC CAGAATCACA ATTCGACCTG
CTTGAAACCC GTCATGCCCT TGAAGGTATT GCCGCCTATT ACGCTGCATT ACGTGGCACT
GATGAAGATC TGCAACGTAT CCGTGAGTGC CATACTGTCA TCCAGCAAGC GCAGGATAAC
GGTGATTTGG ATGCTGAAGC CGATGCGGTG ATGCAGTATC AAGTGGCGGT CACAGAGGCT
GCACATAATG TGGTCTTGCT GCATTTACTC CGTTGCATGG GGCCAATGCT GGAACAAAAC
GTCAGACAAA ACTTTGAATT GCTCTACTTG CGCCGCGAAA TGTTGGCCAC TGTGAGCAGT
CACCGAGCCA GGATTTTCGA GGCGATTGTG GCACGTGAAC CAGAAAAAGC ACGAGAAGCA
TCGCACCGTC ACTTGGCGTT TATTGAGGAG ATTCTGTTGG ATCTTAGCCG GGAGCACAGT
CGCCGTGAGC GATCTTTGCG TCGGCTCCAA CAGCGCAAGG AGTAG
|
|---|
| Protein sequence | MAYNKIRQPK LSDVIEQQLE YLILEGTLRP GEKLLPEREL AKQFDVSRPS LREAIQRLEA
KGLLLRRQGG GTFVQTNLWQ SFSDPLAELL ADHPESQFDL LETRHALEGI AAYYAALRGT
DEDLQRIREC HTVIQQAQDN GDLDAEADAV MQYQVAVTEA AHNVVLLHLL RCMGPMLEQN
VRQNFELLYL RREMLATVSS HRARIFEAIV AREPEKAREA SHRHLAFIEE ILLDLSREHS
RRERSLRRLQ QRKE
|
|---|
| |