| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3271 |
|---|
| Symbol | |
|---|
| ID | 5385590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 3681773 |
|---|
| End bp | 3683416 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640866286 |
|---|
| Product | fumarate hydratase, class I |
|---|
| Protein accession | YP_001402228 |
|---|
| Protein GI | 153950524 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAACA AACCGTTCCA CTATCAGGAT CCCTTCCCGC TCAAGGAAGA TGATACTGAA
TATTACCTTG TCAGTGATAA ACATGTCTCA GTTGCACAGT TTGAAGGACA CGACATCCTA
AAAGTCGAGC CGGAAGCCCT GACCCTCCTC GCTCAACAGG CTTTCCACGA TGCCTCTTTC
CTCCTGCGCC CCGCTCACCA AAAACAAGTT GCCGCCATTC TGGATGACCC GGAAGCCAGC
GAAAACGATA AATATGTCGC CCTGCAATTC CTACGTAACT CTGAGATTTC GGCTAAAGGG
ATTTTACCCA CCTGTCAAGA TACCGGCACC GCGATCATCA TGGGTAAAAA AGGCCAGCGG
GTCTGGACTG GGGGTAACGA TGCCGAAGCG TTATCGCGTG GGGTTTATAA CACCTTTATT
GAAGATAACC TGCGCTATTC ACAAAACGCC GCGCTGGATA TGTATAAGGA AGTGAATACC
GGTACCAACC TGCCAGCACA GATCGATCTA TACAGCACCG AAGGTGAAGA GTACAAATTC
TTGTTTGTGA CTAAAGGCGG CGGTTCAGCC AATAAAACCT ATCTGTATCA GGAAACCAAA
GCCCTGCTCA CACCGGGCAG GCTGAAAGCG TTTTTGGTCG AGAAAATGCG CACATTGGGT
ACCGCGGCTT GCCCGCCTTA TCACATTGCC TTTGTCATCG GCGGTACCTC TGCCGAAAGT
ACGCTGAAGA CGGTTAAACT GGCCTCGACC AAATATTACG ATGGCTTGCC GACCGAAGGG
AATGAACACG GCCAAGCGTT CCGTGACACT GCGTTAGAGC AAGAATTGCT GGAAGCAGCA
CAAGATTTAG GTCTGGGCGC GCAATTTGGC GGCAAATACT TTGCCCACGA TGTTCGGGTC
GTTCGCCTGC CACGCCACGG AGCCTCCTGC CCGATCGGCA TGGGGGTATC TTGTTCTGCT
GACCGTAATA TCAAAGGCAA AATTAACCGC AAAGGTATCT GGCTGGAGAA ACTGGAACAG
AATCCGGGGA AATATATTCC CGAACATTTG CGCCACAGCA CTGAAGGCCA AGTGGTTAAA
ATTGATCTTA ACCGCCCGAT GCCTGAAATT TTAAAAGAGC TGTCACAGTA CCCGGTCTCC
ACCCGCCTGT CGTTAAGCGG CACCATTATT GTTGGGCGTG ATATCGCCCA TGCCAAATTA
AAAGAGCGGC TGGATAACGG TGAAGGCTTA CCACAATACA TTAAAGATCA TCCGATCTAT
TACGCCGGAC CGGCCAAGAC TCCCGAAGGC TATGCTTCAG GATCACTCGG GCCAACCACC
GCAGGGCGCA TGGACTCTTA CGTGGATCTG CTGCAATCCC ACGGGGGTAG CATGATCATG
TTAGCCAAAG GCAACCGTAG CCAGCAAGTG ACCGATGCCT GCCATAAACA CGGGGGCTTC
TATCTGGGCA GCATCGGCGG CCCGGCAGCG GTATTGGCGC AAAACAGTAT TAAGAGTCTG
GAATGTGTGG AATATCCTGA ATTAGGGATG GAAGCCATCT GGAAGATTGA AGTGGAAGAC
TTCCCAGCCT TTATTTTAGT TGATGATAAG GGCAATGATT TCTTCCAGCA GATCCAAGCG
GCAAAATGCA ACCGTTGTGG CTGA
|
|---|
| Protein sequence | MSNKPFHYQD PFPLKEDDTE YYLVSDKHVS VAQFEGHDIL KVEPEALTLL AQQAFHDASF
LLRPAHQKQV AAILDDPEAS ENDKYVALQF LRNSEISAKG ILPTCQDTGT AIIMGKKGQR
VWTGGNDAEA LSRGVYNTFI EDNLRYSQNA ALDMYKEVNT GTNLPAQIDL YSTEGEEYKF
LFVTKGGGSA NKTYLYQETK ALLTPGRLKA FLVEKMRTLG TAACPPYHIA FVIGGTSAES
TLKTVKLAST KYYDGLPTEG NEHGQAFRDT ALEQELLEAA QDLGLGAQFG GKYFAHDVRV
VRLPRHGASC PIGMGVSCSA DRNIKGKINR KGIWLEKLEQ NPGKYIPEHL RHSTEGQVVK
IDLNRPMPEI LKELSQYPVS TRLSLSGTII VGRDIAHAKL KERLDNGEGL PQYIKDHPIY
YAGPAKTPEG YASGSLGPTT AGRMDSYVDL LQSHGGSMIM LAKGNRSQQV TDACHKHGGF
YLGSIGGPAA VLAQNSIKSL ECVEYPELGM EAIWKIEVED FPAFILVDDK GNDFFQQIQA
AKCNRCG
|
|---|
| |