Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3138 |
Symbol | sbcD |
ID | 5386432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 3530488 |
End bp | 3531732 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640866145 |
Product | exonuclease subunit SbcD |
Protein accession | YP_001402098 |
Protein GI | 153950331 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTATTA TTCATACCTC TGACTGGCAT TTGGGGCAGT ATTTTTTCAC CAAAAGCCGT GCTGCTGAAC ATCAGGCATT TCTGCACTGG TTGATTGAGC AGATCAAAGA ACACCAGGTT GATGCGCTGA TTGTCGCAGG GGATATTTTT GATACCGGTG CCCCACCCAG CTATGCCCGT GAGCTCTATA ACCGTTTTAT TGTTGAGCTC CAGCCTACCG CCTGTCAATT AGTGGTACTG GGTGGCAACC ATGATTCGGT AGCCACACTG AATGAATCAC GAGATTTACT TTCATACCTG AATACCTCGG TAATCTCATG TGCCAGTCGT GATCTGAAAC AACAAGTGAT TATCCTGAAA AATAGACAGC AGCAACCCGC AGCGGTGCTA TGCGCCATTC CGTTTTTACG GCCCCGTGAT CTGGTGACCA GTCAAGCGGG TGAGTCTGGT GACCAGAAAC AACTGGCATT ACAAGAAGCT ATTGCTGGCC ACTATCAAAC GTTATATCAA CGCGCCCTAG AACTGCGATC TCAGCTTGGC TTGCCTCTGC CCATTATCGC CACCGGGCAC CTGACCACCG TGGGTGTGAC AACCACAGAC TCAGTACGAG ACATTTATAT TGGTACACTA GATGCCTTTC CGGCTCAGGC TTTTCCACCC GCGGATTACA TTGCCCTTGG TCATATCCAT CGCGCTCAAC AGGTCGCTAA AACTGAACAT ATCCGCTACA GCGGCTCACC TATAGCGCTC AGTTTTGATG AACTAAGCAA AGAGAAAAGT GTGTATTTGG TGGAGTTTGA CCAGCAAAAT CTGTCATCAG TTACCCCACT CTTCATTCCA CAATTTCAAC CGATGCAATT GATCAAAGGT GATTTGCGCC AAATAGAGCA GCAATTAGCG GCATTTGCTG GCCATGAAGG CTTACCCGTG TGGTTGGATA TAGAAGTGGC AACCCAAGAC TATCTCACCG ATATTCAAAG ACGGATCCAG GAACTGGCAG CGAACTTGCC CGTTGAAGTG GTATTACTAC GCCGTAGCAA AGAACAACGT AATAACAGCA TCCACCGGCA GGAAAAAGAA ACGCTAAACG AATTGACCGT CAGTGACGTA TTTGAACGTA GGCTGGCACT GGAGGCAGAT TTACCCGAGC CTCGCCAGCA GCGAATGCGC CAAATGTTCA ATTACGTGGT TGATGAAATA GCACAAGATG GCAGTAACGG TGTGGCGGAG GAGCCAGCCC AATGA
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Protein sequence | MRIIHTSDWH LGQYFFTKSR AAEHQAFLHW LIEQIKEHQV DALIVAGDIF DTGAPPSYAR ELYNRFIVEL QPTACQLVVL GGNHDSVATL NESRDLLSYL NTSVISCASR DLKQQVIILK NRQQQPAAVL CAIPFLRPRD LVTSQAGESG DQKQLALQEA IAGHYQTLYQ RALELRSQLG LPLPIIATGH LTTVGVTTTD SVRDIYIGTL DAFPAQAFPP ADYIALGHIH RAQQVAKTEH IRYSGSPIAL SFDELSKEKS VYLVEFDQQN LSSVTPLFIP QFQPMQLIKG DLRQIEQQLA AFAGHEGLPV WLDIEVATQD YLTDIQRRIQ ELAANLPVEV VLLRRSKEQR NNSIHRQEKE TLNELTVSDV FERRLALEAD LPEPRQQRMR QMFNYVVDEI AQDGSNGVAE EPAQ
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