Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3112 |
Symbol | dxs |
ID | 5388083 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 3502108 |
End bp | 3503967 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640866119 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001402072 |
Protein GI | 153950304 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCTTG ATATAGCCAA ATACCCGACA CTGGCACTTG CGGAGAACCC AGAAGAACTG CGCATGCTGC CGAAAGAAAG CTTGCCGAAG TTATGTGATG AACTCCGGCA GTATTTGCTC ACCTGTGTCA GCCGATCCAG CGGGCATTTT GCTTCCGGGT TAGGCGTAGT CGAACTGACT GTCGCTTTAC ATTACGTTTA TAATACGCCG TTTGATCATT TGATATGGGA CGTAGGTCAT CAGGCTTATC CGCACAAAAT ATTGACCGGC CGCCGTGATC GAATCTCTAC TATTCGTCAA AAAGATGGTT TGCACCCTTT TCCATGGCGC GGAGAGAGTG AATACGACGT GCTTTCTGTT GGTCACTCCT CTACATCGAT CAGCGCGGGT CTGGGTATGG CGGTTGCTGC CGAGCGGGAA GGTAAAGGGC GACGTACCGT TTGCGTTATC GGTGATGGTG CTATCACCGC AGGTATGGCT TTTGAAGCAA TGAGTCATGC CGGAGATATT CACTCAGACA TGCTGGTTAT CCTCAATGAT AATGAAATGT CTATTTCAGA AAATGTAGGT GGCCTGAACA ACCATTTGGC TCAATTATTA TCTGGAAAAC TCTATGCCAG CCTACGTGAA GGCGGTAAAA AAGCATTTTC TGCCTTACCA CCAATCAAAG ATCTGCTGAA ACGAACCGAA GAGCATCTGA AAGGGATGGT AGTCCCCAGT ACGTTGTTTG AAGAGTTAGG TTTTAATTAT ATTGGTCCCG TTGATGGGCA TGATGTACAC ACGTTGACGC AAACGCTAAA AAATATGCGC GACCTGAAAG GTCCACAACT TCTGCACATC ATGACTAAAA AGGGCAAAGG CTATGCTCCG GCAGAAAAGG ATCCAATCGG TTGGCATGCC GTACCTAAGT TTGATCCCGC CTCCGGCACC TTGCCTAAAA GCCAGAGCAG CCTCCCCACT TACTCCAAAA TATTTGGCGA ATGGTTATGC GAAACCGCAG CCAAAGATAG CAAATTAATG GCAGTGACAC CGGCGATGCG TGAAGGATCC GGCATGGTGC GTTTCTCGCG CGAATATCCG CAACAATATT TCGATGTCGC CATCGCTGAA CAACATGCAG TGACCTTTGC CGCAGGCCTG GCTATTGGTG GCTACAAGCC TGTGGTTGCC ATCTATTCGA CTTTCTTGCA ACGCGCCTAT GATCAGTTGA TCCATGATGT TGCTATCCAA AATTTGCCCG TGCTCTTTGC CATTGACCGT GGCGGTTTGG TCGGTGCTGA TGGGCAGACT CACCAAGGTG CATTCGATCT TTCATTTATG CGCTGTATTC CAAACATGGT CATTATGGCA CCAAGTGATG AGAATGAGTG CCGTCAGATG CTATACACCG GCTATCACCA TAATGGACCT GCCGCAGTAC GTTACCCACG AGGTAATGGT ACGAGCGCGG TGCTGGAGCC ATTGGAGATG TTGCCGATCG GCAAAGGGGT ACTACGCCGT GAAGGTGAGA AGATTGCCAT CCTTTGCTTT GGTACGTTAC TTGCTCAGGC ACAGCTTGCC GCAGAAAACC TCAATGCCAC GCTGGTGGAT ATGCGTTTCG TGAAACCGCT AGATGAAGAA TTGGTATTGG AAATGGCAGC AAAACATCAG GTATTAGTGA CTGTCGAAGA AAACGCCATC ATGGGGGGGG CGGGTAGCGG TGTGAATGAG CTATTAATGG CAAAACGGCG ATGGGTCCCA GTACTCAATA TTGGTTTACC CGATCTATTT GTGCCACAAG GTGAGCAAGA CGAAATGCGA TCTGAACTCG GTTTAGATGC GGCGGGTATA CAGCGTCAAA TTGAAGCTTG GCTAGCTTAA
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Protein sequence | MSLDIAKYPT LALAENPEEL RMLPKESLPK LCDELRQYLL TCVSRSSGHF ASGLGVVELT VALHYVYNTP FDHLIWDVGH QAYPHKILTG RRDRISTIRQ KDGLHPFPWR GESEYDVLSV GHSSTSISAG LGMAVAAERE GKGRRTVCVI GDGAITAGMA FEAMSHAGDI HSDMLVILND NEMSISENVG GLNNHLAQLL SGKLYASLRE GGKKAFSALP PIKDLLKRTE EHLKGMVVPS TLFEELGFNY IGPVDGHDVH TLTQTLKNMR DLKGPQLLHI MTKKGKGYAP AEKDPIGWHA VPKFDPASGT LPKSQSSLPT YSKIFGEWLC ETAAKDSKLM AVTPAMREGS GMVRFSREYP QQYFDVAIAE QHAVTFAAGL AIGGYKPVVA IYSTFLQRAY DQLIHDVAIQ NLPVLFAIDR GGLVGADGQT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYHHNGP AAVRYPRGNG TSAVLEPLEM LPIGKGVLRR EGEKIAILCF GTLLAQAQLA AENLNATLVD MRFVKPLDEE LVLEMAAKHQ VLVTVEENAI MGGAGSGVNE LLMAKRRWVP VLNIGLPDLF VPQGEQDEMR SELGLDAAGI QRQIEAWLA
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