| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2828 |
|---|
| Symbol | betT |
|---|
| ID | 5387634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 3193902 |
|---|
| End bp | 3195950 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640865820 |
|---|
| Product | choline transport protein BetT |
|---|
| Protein accession | YP_001401791 |
|---|
| Protein GI | 153949444 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACTT CAGACATCGA AACAAAACCG CAAAAGGATA CGTTAAATCC GGTGGTGTTC
TTTACGTCCG CAGGGTTGAT CCTCGCGTTC TGTCTTATGA CTATTTTTTA TACTGACCTC
TCTAATCGCT GGGTTGGTAT TACCCTTAAC TGGGTCTCTG CCACTTTTGG TTGGTACTAT
CTGCTGGCGG CCACGCTGTA TATCGTTTTT GTTATTTATA TTGCCACTTC ACGCTATGGC
TCAATCAAAC TTGGCCCCGA GCAGTCAAAG CCCGAGTTCA GCCTGGTCAG TTGGGCGGCA
ATGCTGTTCG CCGCCGGTAT CGGTATTGAC CTGATGTTCT TCTCGGTAGC CGAACCCGTG
ACGCAATATA TGATGCCACC TGAAGGCCAG GGCCAGACTC TGGAAGCCGC GCGGCAGGCG
ATGGTCTGGA CGCTGTTCCA CTATGGGCTG ACAGGTTGGT CAATGTATGC ATTGATGGGG
ATTGCACTCG GTTACTTCAG CTATCGCTAT AACCTGCCGT TGACCATCCG TTCCGCGCTT
TACCCTATCT TTGGTAAGCG GATCGATGGG CCAATCGGCC ACAGTGTGGA TATCGCCGCC
GTTATCGGGA CGATTTTCGG GATTGCCACC ACATTGGGGA TTGGGGTGGT GCAGCTCAAT
TACGGCCTCA ATGTCCTGTT TCATATCCCG GAAAGTCTGG CGGTTCAGGC CGGGTTAATT
CTGTTGTCGG TGGTGATGGC GGCAGTATCG GTGACATCGG GTGTCAACAA AGGCATTCGG
ATCCTCTCTG AAGTGAATGT TCTGCTGGCG TTAGGCCTGA TCCTATTCCT GCTGTTCTGG
GGGAACACGG AATTCCTGCT GAATGCGCTG GTGCTTAACG TGGGGGATTA TATCAATCGC
TTTTTGGGCA TGACGCTCAA CAGTTTTGCT TTTGATCGCC CAACCCAATG GATGAATAGC
TGGACGCTGT TTTTCTGGGC ATGGTGGGTT GCCTGGTCAC CCTTTGTTGG TCTGTTTCTG
GCGCGTATTT CCCGTGGCCG CACTATCCGC CAATTTGTGG TCGGTACGTT GATCATACCC
TTTGTCTTCA CCTTGCTTTG GCTGTCTATC TTCGGTAATA GCGCGTTGTA CCAGATCCTG
CATGGCAATA TTGCTTTTGC TAATGAAGTG ATGGAGTTTC CGGAACGCGG TTTCTATAGC
CTGTTAGCAC AGTACCCCGG TTTCACTTTG AGTGCTTCGG TTGCCACGAT CACCGGCTTG
CTATTTTATG TCACGTCAGC GGATTCCGGT TCGCTAGTGC TGGGGAATTT CACCTCTCGT
CTGGCCGATA TTAATAATGA TTCCCCCAAC TGGTTACGTA CTTTCTGGTC TATTACTATC
GGGTTACTGA CTTTGGGAAT GTTGATGACC GATGGTGTCA CCGCCTTGCA AAACGCAACC
GTCATTATGG GGTTACCGTT CAGTTTTGTG ATTTTCTTCG TGATGGTCGG CTTGTATAAA
TCGCTAAAAA TTGAGGATTA CCGCAAAGCC AGCTCGCAAC AGACACCAAC GCCTACGTTG
ATTTCAGGCA ATGAAGTACT AAATTGGAAA CAACGTTTAT CGCGAGTAAT GAACTACCCA
GGTACCACTT ATACCGCGAA AATACTGGAT ACCATTTGCC GCCCAGCGAT GGAGGAAGTT
GCGCAGGAAC TGGCCGTACG CGGTGTTAAA GTTGAATTCA ACGAACTGCC GCCGAAGGAA
GATGAACAAC TCAATCGTCT TAATCATCTG GAGTTGCTGG TACATCTGGG TGATGAGCAG
AACTTCGTCT ACCAGATCTG GCCGCAACGT TATTCTGTGC CGGCATTCAC CTACCGTGCA
CGCTCAGGGA AATCACACTA TTACCGCCTT GAAACTTATC TGCTTGAAGG AACGCAGGGG
AATGATTTGA TGGACTACAG CAAAGAACAG ATTATCAATA ACATTCTTGA CCAATATGAG
CGCCATATGA ACTTCCTACA TATTCAAAGT GAAGCGCCGG GAAATATCAT GACATTTCCC
GATCAATAG
|
|---|
| Protein sequence | MVTSDIETKP QKDTLNPVVF FTSAGLILAF CLMTIFYTDL SNRWVGITLN WVSATFGWYY
LLAATLYIVF VIYIATSRYG SIKLGPEQSK PEFSLVSWAA MLFAAGIGID LMFFSVAEPV
TQYMMPPEGQ GQTLEAARQA MVWTLFHYGL TGWSMYALMG IALGYFSYRY NLPLTIRSAL
YPIFGKRIDG PIGHSVDIAA VIGTIFGIAT TLGIGVVQLN YGLNVLFHIP ESLAVQAGLI
LLSVVMAAVS VTSGVNKGIR ILSEVNVLLA LGLILFLLFW GNTEFLLNAL VLNVGDYINR
FLGMTLNSFA FDRPTQWMNS WTLFFWAWWV AWSPFVGLFL ARISRGRTIR QFVVGTLIIP
FVFTLLWLSI FGNSALYQIL HGNIAFANEV MEFPERGFYS LLAQYPGFTL SASVATITGL
LFYVTSADSG SLVLGNFTSR LADINNDSPN WLRTFWSITI GLLTLGMLMT DGVTALQNAT
VIMGLPFSFV IFFVMVGLYK SLKIEDYRKA SSQQTPTPTL ISGNEVLNWK QRLSRVMNYP
GTTYTAKILD TICRPAMEEV AQELAVRGVK VEFNELPPKE DEQLNRLNHL ELLVHLGDEQ
NFVYQIWPQR YSVPAFTYRA RSGKSHYYRL ETYLLEGTQG NDLMDYSKEQ IINNILDQYE
RHMNFLHIQS EAPGNIMTFP DQ
|
|---|
| |