| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2676 |
|---|
| Symbol | |
|---|
| ID | 5385074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 3029820 |
|---|
| End bp | 3032291 |
|---|
| Gene Length | 2472 bp |
|---|
| Protein Length | 823 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640865666 |
|---|
| Product | fimbrial usher protein |
|---|
| Protein accession | YP_001401641 |
|---|
| Protein GI | 153949677 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.529958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTT CATTTTTAGT GGGTGCCCAG CGTTATTCTT TTGATCCCAA TCTGCTAGTG
GATGGCAATA ACAACACTGA TACCTCGTTA TTTGAACAGG GCAATGAATT ACCGGGCACC
TATTTGGTGG ATATTATCTT GAATGGGAAT AAAGTGGACT CTACGAATGT GACATTTCAT
TCGGAGAAAT CGCCATCAGG AGAGCCTTTC TTGCAATCTT GCTTAACCAA GGAGCAACTA
TCCCGCTATG GTGTGGATGT TGATGCCTAT CCCGAGTTAT CTCCAGCATT AAAAAACTCA
CAGACAAACC CGTGTGTCAA TTTAGCCGCT ATCCCTCAGG CCAGTGAAGA GTTCCAATTT
TATAATATGC AGTTGGTACT GAGTATTCCA CAAGCGGCTT TACGGCCTGA AGGTGAAGTG
CCAATAGAAC GCTGGGATGA TGGTATTACG GCTTTTTTGC TGAACTACAT GGCAAATATC
AGTGAAACCC AGTTTCGTCA AAATGGTGGA TACCGGCGTT CACAATATAT CCAGTTATAT
CCCGGTTTAA ATTTGGGGGC GTGGCGTGTT CGTAATGCGA CCAACTGGAG TCAATCTGGC
GATAGGGGGG GTAAATGGCA AAGTGCTTAT ACCTATGCCA CTCGTGGGAT TTATCGTTTA
AAGAGCCGGG TGACCTTAGG GGAGAGTTAC ACCCCAGGTG ATTTTTTCGA CAGCATTCCC
TTTCGTGGCG TGATGTTGGG GGACGATCCT AATATGCAGC CAAGTAACCA GCGGGATTTT
ATACCGGTGG TGCGTGGTAT TGCCCGTAGT CAGGCGCAGG TGGAAATCAG ACAAAATGGT
TATCTGATTT ATAGTACGGT GGTGCCGCCG GGGCCGTTTG AACTCTCTGA CGTGATCCCG
AGTAAATCAG GCAGTGACCT ACATGTTAGG GTGCTGGAAA GTAACGGGGC ATCGCAGGCG
TTTATTGTGC CTTATGAGGT GCCAGCCATT GCATTGCGCA AAGGGCATTT GCGATACAAT
CTGGTGGCAG GGCAGTATCG CCCCGCCAAT GCTGATGTTG AGACGCCTCC GGTCGCTCAG
GCAACCGTCG CCTACGGCTT GCCGTGGAAC TTGACCGCAT TTATCGGTGA GCAGTGGTCG
CGGCATTATC AGGCAACCTC TGCCGGATTA GGGGGGCTAT TGGGGGAGTA TGGCGCATTG
TCATCCAGTA TCACGCAGGC AACCAGTCAG TATCACCATC AACAACCGGT TAAAGGGCAA
GCCTGGGAGG TTCGATACAA CAAAACCTTA CAAGCCTCTG ATACGTCATT TTCATTGGTG
AATAGTCAAT ACAGCACTAA TGGTTTCAGT ACGTTATCTG ATGTATTACA AAGTTACCGG
CAGAGCGGGA GTGGCGATAA TAGAGATAAA ATTGACGAAA ATTCTCGGTC AAGGGATTTG
CGTAACCAAA TCAGTGCGGT CATCGGGCAG TCATTGGGCA AGTTTGGCTA CCTGAATCTT
AATTGGTCGC GGCAGGTCTA CCGTGGGCCG ATTCCGGCTA AGAATTCGTT GGGAATACAC
TATAACCTCA ATGTCGGTAA TAGTTTTTGG GCACTGAGTT GGGTGCAAAA TGCGAATGAG
AACAAGAATG ATCGGATATT GAGTTTGTCT GTCAGTATTC CGCTGGGAGG TCATCACGAT
ACTTATGCTT CCTATAGAAT GACATCTTCC AACGGGAGCA ATGATCATGA AATAGGAATG
TACGGCCAGG CTTTTGACTC TCGCTTGAGT TGGAGTGTGC GTCAGGCAGA GCATTATGGT
CAACCCAACT CAGGGCATAA CAGCGGCTCA CTCAGGTTGG GCTGGCAGGG TTCCTATGGC
AATATCGCGG GAAATTACTA CTATACTCCG AGCATACGTC AGTTATCCGC TGATGTTTCC
GGAGGGGCGA TCATCCATCG GCATGGGCTG ACATTAGGGC CGCAAATCAA TGGCACCTCC
GTGCTGGTTG AAGTTCCGGG CGTCGGCGGG GTGACCACCA CAGAAGATCG CCGTCTGAAA
ACAGATTTTC GCGGTTACAG CATTGTGTCT GGCCTCTCTC CTTATCAGGA GCACGATATC
GTGTTGGAAA CTGCAGATTT ACCGCCGGAT GCGGAGGTGG CAAAAACAGA TACCAAGGTC
TTGCCGACCG AGGGGGCGAT TGTTCGTGCC AGTTTTAGCC CGCAAATCGG GGCAAAGGCG
CTGATGACGA TCACCCGCGC TAATGGCCAA ACCATTCCGT TTGGTGCGAT GGCGAGCTTG
GTTAATCAGT CGGCCAATGC AGCCATTGTC GATGAAGGGG GGAAAGCCTA TCTAACCGGG
TTACCGGAAA CAGGGCAGTT ATTGGTGCAA TGGGGTAAAG ATGCGGGCCA ACAATGCCGG
GTGGATTACC AGCTCTCGCC AGCGGAAAAA GGTGATACCG GGCTGTATAT GCTCAGCGGA
GTATGCCATT AA
|
|---|
| Protein sequence | MSTSFLVGAQ RYSFDPNLLV DGNNNTDTSL FEQGNELPGT YLVDIILNGN KVDSTNVTFH
SEKSPSGEPF LQSCLTKEQL SRYGVDVDAY PELSPALKNS QTNPCVNLAA IPQASEEFQF
YNMQLVLSIP QAALRPEGEV PIERWDDGIT AFLLNYMANI SETQFRQNGG YRRSQYIQLY
PGLNLGAWRV RNATNWSQSG DRGGKWQSAY TYATRGIYRL KSRVTLGESY TPGDFFDSIP
FRGVMLGDDP NMQPSNQRDF IPVVRGIARS QAQVEIRQNG YLIYSTVVPP GPFELSDVIP
SKSGSDLHVR VLESNGASQA FIVPYEVPAI ALRKGHLRYN LVAGQYRPAN ADVETPPVAQ
ATVAYGLPWN LTAFIGEQWS RHYQATSAGL GGLLGEYGAL SSSITQATSQ YHHQQPVKGQ
AWEVRYNKTL QASDTSFSLV NSQYSTNGFS TLSDVLQSYR QSGSGDNRDK IDENSRSRDL
RNQISAVIGQ SLGKFGYLNL NWSRQVYRGP IPAKNSLGIH YNLNVGNSFW ALSWVQNANE
NKNDRILSLS VSIPLGGHHD TYASYRMTSS NGSNDHEIGM YGQAFDSRLS WSVRQAEHYG
QPNSGHNSGS LRLGWQGSYG NIAGNYYYTP SIRQLSADVS GGAIIHRHGL TLGPQINGTS
VLVEVPGVGG VTTTEDRRLK TDFRGYSIVS GLSPYQEHDI VLETADLPPD AEVAKTDTKV
LPTEGAIVRA SFSPQIGAKA LMTITRANGQ TIPFGAMASL VNQSANAAIV DEGGKAYLTG
LPETGQLLVQ WGKDAGQQCR VDYQLSPAEK GDTGLYMLSG VCH
|
|---|
| |